Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,670,026 – 10,670,122 |
Length | 96 |
Max. P | 0.621780 |
Location | 10,670,026 – 10,670,122 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 91.44 |
Mean single sequence MFE | -19.27 |
Consensus MFE | -15.85 |
Energy contribution | -15.35 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.15 |
Mean z-score | -1.55 |
Structure conservation index | 0.82 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621780 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10670026 96 - 27905053 UGAGUUUCUGAGCUCGAAUGCAUUGCACUCAAUAGAAAUAAUAUUUCUCCUGAAUUUAAAACAGCUAUUGAGCUAAAAAGGUAUU-UAAAUA-AAAGU .(((((....)))))((((((......((((((((.........(((....)))..........))))))))........)))))-).....-..... ( -17.85) >DroSim_CAF1 13034 96 - 1 UGAGUUUCUGAGCUCGAAUGCAUUGCACUCAAUAGAAAUAAUAUUUCUCCUGAAUUUAAAACAGCCAUUGAGCUAAAAAGGGAUU-UCAAUA-AAAGC .((((..((.(((((((.(((...))).(((..((((((...))))))..)))..............)))))))....))..)))-).....-..... ( -18.80) >DroEre_CAF1 8671 97 - 1 UGAGUUUCUGAGCUCGAAUGCGUUGCACUCAAUGGAAAUAAUAUUUCUUUUGCAUUUAAAACAGCUUUUGAGUUGAAAAGGAAUU-UAAAUAAAAAGC (((((((((.((((((((.(((((.....(((.((((((...)))))).))).......))).)).))))))))....)))))))-)).......... ( -21.20) >DroYak_CAF1 3307 98 - 1 UGAGUUUCUGAGCUCGAAUGCGUUGCACUCAAUAGAAAUAAUAUUUCUCCUGCAUUUAAAACAGCCAUUGAGCUAAAAAGGAAUUUUUAAUAAAAAGC .((((((((.(((((.((((.((((....((..((((((...))))))..)).........)))))))))))))....))))))))............ ( -19.22) >consensus UGAGUUUCUGAGCUCGAAUGCAUUGCACUCAAUAGAAAUAAUAUUUCUCCUGAAUUUAAAACAGCCAUUGAGCUAAAAAGGAAUU_UAAAUA_AAAGC ..(((((((.(((((((..((((((....))))((((((...))))))...............))..)))))))....)))))))............. (-15.85 = -15.35 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:45 2006