Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,667,819 – 10,667,939 |
Length | 120 |
Max. P | 0.971051 |
Location | 10,667,819 – 10,667,939 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.75 |
Mean single sequence MFE | -29.51 |
Consensus MFE | -22.66 |
Energy contribution | -23.98 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.06 |
Mean z-score | -2.68 |
Structure conservation index | 0.77 |
SVM decision value | 1.67 |
SVM RNA-class probability | 0.971051 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10667819 120 + 27905053 AUUCUGUGUCUUGAACCAGAAACAUCCAUAGAAGCAUAACGUUAGCAUACAAAGCACACAACAAUUUAUGAAUCGGAGGAUUGCCUUCUCCUGGUUUAAGAAGUAACAAGAUUUAACAAU ..(((((.(((((((((((.......(((((((((.....))).((.......)).........))))))....(((((....)))))..)))))))))))....)).)))......... ( -27.50) >DroSec_CAF1 9421 120 + 1 AUUCUGUGUCUUGAACCAGAAACAUCCAUAGAAGCAUAACGUUAGCUUACAAGGCACACAACAAUUUAUGGAUCGGAGGAUUGCCUUCUCCUGGUUUAAGAAGUAACAAGAUUUAACAAU ..(((((.(((((((((((....((((((((((((.....))).(((.....))).........))))))))).(((((....)))))..)))))))))))....)).)))......... ( -34.30) >DroSim_CAF1 9552 120 + 1 AUUCUGUGUCUUGAACCAGAAACAUCCAUAGAAGCAUAACGUUAGCAUACAAAGCACACAACAAUUUAUGGAUCGGAGGAUUGCCUUCUCCUGGUUUAAGGAGUAACAAGAUUUAACAAU ..(((((.(((((((((((....((((((((((((.....))).((.......)).........))))))))).(((((....)))))..)))))))))))....)).)))......... ( -31.90) >DroEre_CAF1 6355 115 + 1 AUUCUGUGUCUUGAACCAGAAACAUCCAUAGAAGCCUAACAU-----UACAAAGCAUUCAACAAUUUAUGGAUCGGAGGAUUGCCUUCUUCUGGUUUACGAAGUUAAAAGAUUUGACAAU ........((.((((((((((..(((((((((..........-----.................))))))))).(((((....))))))))))))))).)).(((((.....)))))... ( -27.03) >DroYak_CAF1 997 120 + 1 AUUCUGUGUCUUGAACCAGAAACACCCAUAGAAGCAUAACGCCAGCAUACAAAGCACAGAACAAUUUAUGGAUCCGAGGAUUGCCUUCUCCUGGUUUAAGUAGUUAAAAGAUUUGACAAU .........((((((((((......(((((((.((.....))..((.......)).........)))))))....(((((.....)))))))))))))))..(((((.....)))))... ( -26.80) >consensus AUUCUGUGUCUUGAACCAGAAACAUCCAUAGAAGCAUAACGUUAGCAUACAAAGCACACAACAAUUUAUGGAUCGGAGGAUUGCCUUCUCCUGGUUUAAGAAGUAACAAGAUUUAACAAU ..(((...(((((((((((....(((((((((.((.....))..((.......)).........))))))))).(((((....)))))..))))))))))).......)))......... (-22.66 = -23.98 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:41 2006