Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,667,695 – 10,667,786 |
Length | 91 |
Max. P | 0.530569 |
Location | 10,667,695 – 10,667,786 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 92.49 |
Mean single sequence MFE | -32.32 |
Consensus MFE | -25.24 |
Energy contribution | -25.48 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.48 |
Structure conservation index | 0.78 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530569 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10667695 91 - 27905053 CCUUUUUGCCCGGGCCUGCCAACAAAUUGAGUUACAUAAUUAUGCGCGGGCUGACUGCGGCGGUGGCCAGAAACCAGACUGGGGC----GCAAAA ...((((((((((.(((((((((.......)))............((((.....))))))))).).)).....((.....)))).----)))))) ( -28.50) >DroSec_CAF1 9298 90 - 1 CCUU-UUGCCCGGGCCUGCCAACAAAUUGAGUUACAUAAUUAUGGGCGGGCUGGCUGCGGCGGUGGCCAGGAACCAGAAUGGGGC----GCAAAA ....-..((((.(((((((((((.......))).(((....)))))))))))(((..(....)..))).............))))----...... ( -33.40) >DroSim_CAF1 9429 90 - 1 CCUU-UUGCCCGGGCCUGCCAACAAAUUGAGUUACAUAAUUAUGCGCGGGCUGGCUGCGGCGGUGGCCAGAAACCAGAAUGGGGC----GCAAAA ....-..((((.(((((((((......((.....))......)).)))))))(((..(....)..))).............))))----...... ( -29.70) >DroEre_CAF1 6228 94 - 1 CCUU-UUGCCCGGGCCUGCCAACAAAUUGAGUUACAUAAUUAUGCGCGGGCUGACUGUGGUGGUGGCCAAAAACCAGAGUGGGGCAAAGGCAAAA .(((-((((((.(((((((((......((.....))......)).))))))).(((.((((..(.....)..)))).))).)))))))))..... ( -34.70) >DroYak_CAF1 870 94 - 1 CCUU-UUGCCCGGGCCUGCCAACAAAUUGAGUUACAUAAUUAUGCGCGGGCUGGCUGCGGUGGUGGCCAAAACCCAGAGUGGGGCAAAGGCAAAA .(((-((((((.(((((((((......((.....))......)).)))))))(((..(....)..))).............)))))))))..... ( -35.30) >consensus CCUU_UUGCCCGGGCCUGCCAACAAAUUGAGUUACAUAAUUAUGCGCGGGCUGGCUGCGGCGGUGGCCAGAAACCAGAAUGGGGC____GCAAAA .......((((.(((((((((......((.....))......)).)))))))(((..(....)..))).............)))).......... (-25.24 = -25.48 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:40 2006