Locus 393

Sequence ID 3R_DroMel_CAF1
Location 1,471,332 – 1,471,423
Length 91
Max. P 0.574152
window649

overview

Window 9

Location 1,471,332 – 1,471,423
Length 91
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 82.63
Mean single sequence MFE -28.95
Consensus MFE -21.83
Energy contribution -21.42
Covariance contribution -0.41
Combinations/Pair 1.35
Mean z-score -1.46
Structure conservation index 0.75
SVM decision value 0.08
SVM RNA-class probability 0.574152
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1471332 91 + 27905053
GGAAUGGCGGCACACUUGUGCCUCAAAUGUAUA-UUUUUACGCUAGUUUUCUGCGCCUGAUUAGCGAGUGGCCUGCGAAAAGGCGACGCACG-----
......(((((((....)))))...........-......((((((((..........)))))))).((.((((......)))).))))...----- ( -29.10)
>DroSec_CAF1 5152 91 + 1
GGAAUGGCGGCACACUUGUGCCUCAAAUGUAUA-UUUUUGCGCUAGUUUUCAGCGCUUGAUUAGCAACUCGCCUGCGAAAAGGCGACGCACG-----
(((((((((((((....)))))......(((..-....)))))))..)))).(((((.....)))...((((((......)))))).))...----- ( -30.20)
>DroSim_CAF1 5213 91 + 1
GGAAUGGCGGCACACUUGUGCCUCAAAUGUAUA-UUUUUGCGCUAGUUUUCAGCGCCUGAUUAGCGACUCGCCUGCGAAAAGGCGACGCACG-----
.....((((((((....)))))......(((..-....)))(((.......))))))......(((..((((((......)))))))))...----- ( -30.40)
>DroEre_CAF1 6149 92 + 1
GGAAGUGCGGCAUAUUUGUGCUCCAAAUGUAUAAUUUUUGCGCUAAUUUUCAGAGCCUGAUUAGCGAGUGGCCUGCGAAAAGGCGACGCACG-----
....((((.(((...((((((.......))))))....)))(((((((..........)))))))..((.((((......)))).)))))).----- ( -30.30)
>DroAna_CAF1 4398 92 + 1
GGAAUAUCGGCACACUUGUGCCACAAAUUUACACUUUUUGCGCUAAUUUUUAAUGCCUGAUUAGCAAGUGGCCCGCCAAAAGGUGGCACUCG-----
........(((((....))))).........(((((.....(((((((..........))))))))))))(((.(((....)))))).....----- ( -25.90)
>DroPer_CAF1 5963 93 + 1
GGAAUAGCGGCACACUUGUGCUCAAACUUUAGA-UUUUUGUGCUAAUUUUU---GCCUGAUUAGUGAGCGGCCUGCCAAAAGGCGGCGCACGGCGCA
......(((((((....))))............-...(((((((((((...---....)))))....((.((((......)))).))))))))))). ( -27.80)
>consensus
GGAAUGGCGGCACACUUGUGCCUCAAAUGUAUA_UUUUUGCGCUAAUUUUCAGCGCCUGAUUAGCGAGUGGCCUGCGAAAAGGCGACGCACG_____
......(((((((....)))))...................(((((((..........)))))))..((.((((......)))).))))........ (-21.83 = -21.42 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:09 2006