Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,667,413 – 10,667,508 |
Length | 95 |
Max. P | 0.939247 |
Location | 10,667,413 – 10,667,508 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 92.63 |
Mean single sequence MFE | -32.65 |
Consensus MFE | -26.02 |
Energy contribution | -26.46 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -2.08 |
Structure conservation index | 0.80 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939247 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10667413 95 + 27905053 UUGCUGUUGCCGCUGCUAUUACCCAUACGCACUGUGAUCACCC-GAAAAUACUGAA-GGGGGC--AA-A-CUGAAAGUGGCAGGGCGACCGGUAAUUGGAA (((((((((((.((((((((...((((.....))))....(((-............-)))...--..-.-.....))))))))))))).))))))...... ( -28.30) >DroSec_CAF1 9028 96 + 1 UUGCUGUUGCCGCUGCCAUUACCCAUACGCACUGUGAUCGCCC-GAAAAUACUGAA-GGGGGC--AA-AGCUGAAAGUGGCAGGGCGACCGGUAAUUGGAA (((((((((((.((((((((...((((.....))))...((((-............-..))))--..-.......))))))))))))).))))))...... ( -33.44) >DroSim_CAF1 9144 98 + 1 UUGCUGUUGCCGCUGCCAUUACCCAUACGCACUGUGAUCACCCCAAAAAUACUGAA-GGGGGC--AAAAGCUGAAAGUGGCAGGGCGACCGGUAAUUGGAA (((((((((((.((((((((...((((.....)))).(((((((............-))))((--....))))).))))))))))))).))))))...... ( -34.30) >DroEre_CAF1 5945 95 + 1 UUGCUGUUGCCACUGCCAUUACCCAUACGCAGUGUUAUCACCA-GAAAAUACUGAA-GGGGGC--AA-A-CUGAAAGCGACAGGGCGACCGGUAAUUGGAA (((((((((((.(((.(....(((.....(((((((.((....-)).)))))))..-.)))((--..-.-......))).)))))))).))))))...... ( -30.30) >DroYak_CAF1 584 98 + 1 UUGCUGUUGCCACUGCCAUUACCCAUACGCAGUGUGAUCACCA-GAAAAUACUGAGAGGGGGCGAAA-A-CUGAAAGUGGCAGGGCGACCGGUAAUUGGAA (((((((((((.((((((((.(((.....((((((..((....-))..))))))....))).((...-.-.))..))))))))))))).))))))...... ( -36.90) >consensus UUGCUGUUGCCGCUGCCAUUACCCAUACGCACUGUGAUCACCC_GAAAAUACUGAA_GGGGGC__AA_A_CUGAAAGUGGCAGGGCGACCGGUAAUUGGAA (((((((((((.((((((((.(((.....((.(((..((.....))..))).))...)))((........))...))))))))))))).))))))...... (-26.02 = -26.46 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:39 2006