Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,667,208 – 10,667,316 |
Length | 108 |
Max. P | 0.989614 |
Location | 10,667,208 – 10,667,316 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 96.85 |
Mean single sequence MFE | -28.09 |
Consensus MFE | -25.00 |
Energy contribution | -25.16 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -2.00 |
Structure conservation index | 0.89 |
SVM decision value | 2.17 |
SVM RNA-class probability | 0.989614 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10667208 108 + 27905053 CAUUCGGAAAUGCCAAAAUGUGGCUGUUCGGCUCGAUGGAGCGACAUCAACAUAACUCCGGGCAACAAAGAAAGCGGGCAAUUUGGCAAAAGCCACAAGGAAACAAAA ....((((...((((.....))))..))))(((((.(((((..............)))))(....)........)))))....((((....))))...(....).... ( -28.34) >DroSec_CAF1 8823 108 + 1 CGUUCGGAAAUGCCAAAAUGUGGCUGUUCGGCUCGAUGGAGCGACAUCAACAUAACUCCGGGCAACAAAGAAAGCGGGCAAUUUGGCAAAAGCCACAAGGAAACAAAA ....((((...((((.....))))..))))(((((.(((((..............)))))(....)........)))))....((((....))))...(....).... ( -28.34) >DroSim_CAF1 8939 108 + 1 CAUUCGGAAAUGCCAAAAUGUGGCUGUUCGGCUCGAUGGAGCGACAUCAACAUAACUCCGGGCAACAAAGAAAGCGGGCAAUUUGGCAAAAGCCACAAGGAAACAAAA ....((((...((((.....))))..))))(((((.(((((..............)))))(....)........)))))....((((....))))...(....).... ( -28.34) >DroEre_CAF1 5740 108 + 1 CAUUCGGAAAUGCCAAAAUGUGGCUGUUCGGCUCGAUGGAGCGACAUCAACAUAGCCCCGUACAACAAAGAAAGCGACCAAUUUGGCAAAAGCCACAAGGAAACAAAA .....((...(((((((..((.(((.(((((((.((((......)))).....))))..(.....)...)))))).))...)))))))....))....(....).... ( -26.90) >DroYak_CAF1 373 108 + 1 CAUUCGGAAAUGCCAAAAUGUGGCCGUUCGGCUCGAUGGAGCGACAUCAACAUAACUCCGGGCAACAAAGAAAGCGAGCAAUUUGGCAAAAGCCACAAGGAAACAAAA ....((((...((((.....))))..))))(((((.(((((..............)))))(....)........)))))....((((....))))...(....).... ( -28.54) >consensus CAUUCGGAAAUGCCAAAAUGUGGCUGUUCGGCUCGAUGGAGCGACAUCAACAUAACUCCGGGCAACAAAGAAAGCGGGCAAUUUGGCAAAAGCCACAAGGAAACAAAA .....((...(((((((.(((.(((.(((.((((....))))..................(....)...)))))).).)).)))))))....))....(....).... (-25.00 = -25.16 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:38 2006