Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,663,690 – 10,663,810 |
Length | 120 |
Max. P | 0.665594 |
Location | 10,663,690 – 10,663,810 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.83 |
Mean single sequence MFE | -32.60 |
Consensus MFE | -26.08 |
Energy contribution | -26.89 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.11 |
Mean z-score | -1.65 |
Structure conservation index | 0.80 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665594 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10663690 120 + 27905053 AUCUAUGGAGAUUAAAUGUGUAUGGAUGGGUGUGCCUAUCGGUGUUAUUUUCUCCAGCAACACCGCACACAGUCGUACAACAUGUGUGUAUAAAAAAUGCCAUGCAUGUCGCAUGUCCUG ......(((.((...(((((((((((((((....))))))((((((............))))))(((((((((......)).)))))))...........)))))))))...)).))).. ( -36.40) >DroSec_CAF1 5338 120 + 1 AUCUAUGGAGAUUAAAUGUAUAUGGAUGGGUGUGCCUAUCGGUGUUAUUCUCUCCAGCAACACCGCAAACACUCGUACAACAUGUGUGUAUAAAAAAUGCCAUGCAUGUCGCAUGUCCUG ......(((..(((.(..((((((.((((((((......(((((((............)))))))...))))))))....))))))..).))).......(((((.....)))))))).. ( -32.40) >DroSim_CAF1 5391 120 + 1 AUCUAUGGAGAUUAAAUGUAUAUGGAUGGGUGUGCCUAUCGAAGUUAUUCUCUCCAGCAACACCGCACACACUCGUACAACAUGUGUGUAUAAAAAAUGCCAUGCAUGUCGCAUGUCCUG .....((((((.............((((((....))))))(((....)))))))))((......))((((((..(.....)..))))))...........(((((.....)))))..... ( -30.70) >DroEre_CAF1 1827 110 + 1 AUAUAUGGAGAUUAAAUGUAUGU----GAGUGUGUCUAUCGGUGUUAUUCUCUCCAGCAACGCCGCACACACU------GCAUGUGUGUAUAAAAAAUGCCAUGCAUGUCGCAUGUCCUG ......(((..(((.(..(((((----((((((((....(((((((............))))))).)))))))------.))))))..).))).......(((((.....)))))))).. ( -30.90) >consensus AUCUAUGGAGAUUAAAUGUAUAUGGAUGGGUGUGCCUAUCGGUGUUAUUCUCUCCAGCAACACCGCACACACUCGUACAACAUGUGUGUAUAAAAAAUGCCAUGCAUGUCGCAUGUCCUG .....((((((...((((.((((.((((((....)))))).)))))))).))))))(((.....(((((((...........)))))))........)))(((((.....)))))..... (-26.08 = -26.89 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:28 2006