Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,663,249 – 10,663,408 |
Length | 159 |
Max. P | 0.940930 |
Location | 10,663,249 – 10,663,369 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.62 |
Mean single sequence MFE | -25.47 |
Consensus MFE | -15.36 |
Energy contribution | -16.55 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.27 |
Mean z-score | -1.71 |
Structure conservation index | 0.60 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687037 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10663249 120 - 27905053 AUUCCAAAAUGGGAUUCUUAAACAUGAUAUUACAGCAUAAAGUUUAUAACAGCUUAAUGAAGCGAUGUUUGUUUAAGAAUAUUUGUAUCCUUUCUAGAUUGCCUGUAGACAUUUAAGGUU ..(((.....)))(((((((((((.(((((..(..(((.(((((......))))).)))..)..))))))))))))))))........((((((((.(.....).)))).....)))).. ( -24.20) >DroSec_CAF1 4905 114 - 1 AUUCCUGAACGGGAUUCUUAAACAUGAUAUUACAGCAUAAAGUUUAUAACAGCUUAAUGAAGCGAUGUCUGUUUGAGAAU------AUCCUUUUUAGAUUGCCUGUAGACAUUUAAGGUU ....(((((.((((((((((((((.(((((..(..(((.(((((......))))).)))..)..))))))))))))))..------))))).)))))...((((...........)))). ( -32.50) >DroSim_CAF1 4952 120 - 1 AUUCCUAAACGGGAUUCUUAAACAUGAUAUUACAGCAUAAAGUUUAUAACAGCUUAAUGAAGCGAUGUCUGUUUAUGAAUAUUUGUAUCCUUUUUAGAUGGCCUGUAGACAUUUAAGGUU ....(((((.(((((((.((((((.(((((..(..(((.(((((......))))).)))..)..))))))))))).))........))))).)))))..(((((...........))))) ( -26.70) >DroEre_CAF1 1398 113 - 1 GUAUUAAA--AAAAUUCUUAAAUUUCUUAAAGGGAAACGAAGCUUAUACCAAGUUAAUAACUAGAUGGGUAAGGGAAAACAU---UAUCUUUUUUAGAUAGCCU--UGGCUAUUAAGGUU ........--.....((((((...(((.(((((((.......((..((((...(((.....)))...))))..)).......---..))))))).)))((((..--..)))))))))).. ( -18.49) >consensus AUUCCAAAACGGGAUUCUUAAACAUGAUAUUACAGCAUAAAGUUUAUAACAGCUUAAUGAAGCGAUGUCUGUUUAAGAAUAU___UAUCCUUUUUAGAUUGCCUGUAGACAUUUAAGGUU ....(((((.((((((((((((((.(((((..(..(((.(((((......))))).)))..)..))))))))))))))........))))).)))))...((((...........)))). (-15.36 = -16.55 + 1.19)
Location | 10,663,289 – 10,663,408 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.10 |
Mean single sequence MFE | -25.68 |
Consensus MFE | -15.96 |
Energy contribution | -16.40 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.25 |
Mean z-score | -2.20 |
Structure conservation index | 0.62 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940930 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10663289 119 - 27905053 A-AAGUAUCGUAUUUUCAAAAGCCUAUCCCUUCUUUGAACAUUCCAAAAUGGGAUUCUUAAACAUGAUAUUACAGCAUAAAGUUUAUAACAGCUUAAUGAAGCGAUGUUUGUUUAAGAAU .-........................((((...((((.......))))..))))((((((((((.(((((..(..(((.(((((......))))).)))..)..))))))))))))))). ( -25.10) >DroSec_CAF1 4939 119 - 1 A-AAGUAUCAUAUUUUCAAAGGCCUAUCCCUUCUUUGAACAUUCCUGAACGGGAUUCUUAAACAUGAUAUUACAGCAUAAAGUUUAUAACAGCUUAAUGAAGCGAUGUCUGUUUGAGAAU .-............((((((((.........))))))))...((((....))))((((((((((.(((((..(..(((.(((((......))))).)))..)..))))))))))))))). ( -29.70) >DroSim_CAF1 4992 119 - 1 A-AAGUAUCAUAUUUUCAAAGGCCGAUCCCUUCUUUGAACAUUCCUAAACGGGAUUCUUAAACAUGAUAUUACAGCAUAAAGUUUAUAACAGCUUAAUGAAGCGAUGUCUGUUUAUGAAU .-............((((((((.........))))))))...((((....))))(((.((((((.(((((..(..(((.(((((......))))).)))..)..))))))))))).))). ( -24.60) >DroEre_CAF1 1433 118 - 1 AAAAGUAUCGCAUUUUCAAAGGGCUAUCCGUUCUUUGAAGGUAUUAAA--AAAAUUCUUAAAUUUCUUAAAGGGAAACGAAGCUUAUACCAAGUUAAUAACUAGAUGGGUAAGGGAAAAC ..((((.(((.(((((((((((((.....)))))))))))))......--............(((((.....)))))))).)))).((((...(((.....)))...))))......... ( -23.30) >consensus A_AAGUAUCAUAUUUUCAAAGGCCUAUCCCUUCUUUGAACAUUCCAAAACGGGAUUCUUAAACAUGAUAUUACAGCAUAAAGUUUAUAACAGCUUAAUGAAGCGAUGUCUGUUUAAGAAU ..............((((((((.........)))))))).(((((.....)))))(((((((((.(((((..(..(((.(((((......))))).)))..)..)))))))))))))).. (-15.96 = -16.40 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:27 2006