Locus 3921

Sequence ID	3R_DroMel_CAF1
Location	10,662,553 – 10,662,667
Length	114
Max. P	0.963343

overview

Window 0

Location	10,662,553 – 10,662,667
Length	114
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	93.12
Mean single sequence MFE	-27.80
Consensus MFE	-25.30
Energy contribution	-25.80
Covariance contribution	0.50
Combinations/Pair	1.00
Mean z-score	-2.15
Structure conservation index	0.91
SVM decision value	1.55
SVM RNA-class probability	0.963343
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10662553 114 - 27905053
CUAAAAGCGGAUGGACCAAAGGCCCCAAAAGACUUUUGGCUAUAAUUUAACGCACGAAUGGCUCAGUUAAGCGCUGUAAAAAGACGCAACAACGAGAGCUAACUGCUGUAAAAA
.....(((((((((.(((((((.(......).)))))))))))...............((((((.(((..(((((......)).)))...)))..)))))).)))))....... ( -30.20)
>DroSec_CAF1 4211 114 - 1
CCAAAAGCGGAUGGACCAAAGGCCCCAAAAGACUUUUGGCUUUAAUUUAACGCACGAAUGGCUCAGUUAAGCGCUGUAAAAAGACGCAACAACGAGAGCUAACUGCUGUAAAAA
.....(((((.(((((((((((.(......).))))))).))))..............((((((.(((..(((((......)).)))...)))..)))))).)))))....... ( -27.60)
>DroSim_CAF1 4250 113 - 1
CCAAAAGCGGAUGGACCAAACGCCCCAAAAGACUUUUGGCUAUAAUUUAACGCACGAAUGGCUCAGUUAAGCGCUGUAAAAAGACGCAACAACGAGAGCUAACUGCUGUAA-AA
.....(((((((((.(((((.(.(......).).)))))))))...............((((((.(((..(((((......)).)))...)))..)))))).)))))....-.. ( -26.40)
>DroEre_CAF1 691 102 - 1
CUAAAAGCGGAUGGACCAAAGGCCCCAAAAGACUUUUGGCUAUAAUUUAACGCACGAAUGGCUCAGUUAAGCGCUGUAAAAAGACGCAACAACGAGAGCUAA------------
......(((.((((.(((((((.(......).))))))))))).......))).....((((((.(((..(((((......)).)))...)))..)))))).------------ ( -27.00)
>consensus
CCAAAAGCGGAUGGACCAAAGGCCCCAAAAGACUUUUGGCUAUAAUUUAACGCACGAAUGGCUCAGUUAAGCGCUGUAAAAAGACGCAACAACGAGAGCUAACUGCUGUAA_AA
......(((.((((.(((((((.(......).))))))))))).......))).....((((((.(((..(((((......)).)))...)))..))))))............. (-25.30 = -25.80 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:25 2006