| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,662,223 – 10,662,331 |
| Length | 108 |
| Max. P | 0.957221 |
| Location | 10,662,223 – 10,662,331 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 87.87 |
| Mean single sequence MFE | -33.33 |
| Consensus MFE | -24.31 |
| Energy contribution | -23.93 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.18 |
| Mean z-score | -3.06 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.957221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10662223 108 + 27905053 AGCGCUGGCCGAAUGGCAAACUAGAAAACUGUGUCACUUUUUUCUGACUUCUUUUUCAUGUUUGCUUUUUUUUUAUCAGCUGGAGAAGAUAGAACGGGUAAGCGCAAA .(((((.((((((.(((((((..(((((....((((........))))....)))))..))))))).)))(((((((..(....)..)))))))..))).)))))... ( -32.60) >DroSec_CAF1 3882 106 + 1 AGCGCUGGCCGAAUGGCAAACUAGAAAACUGUGUCACUUU-UUCUGACUUAUUUUUCAUCUUU-UUUUUUCUGAAUCAGCUGGAGAAGAUGGAAAGGGCAAGCGCAAA .(((((.(((...(((((...(((....))))))))....-..........((((((((((((-(((...(((...)))..)))))))))))))))))).)))))... ( -33.10) >DroSim_CAF1 3932 102 + 1 AGCGCUGGCCGAAUGGCAAACUAGAAAACUGUGUCACUUUUUUCUGACUU-UUUCUCA--UUU-UUUUUUCUGAAUCAGCUAGA-AAGAUGGAAAGGGCA-GCGCAAA .(((((((((....)))....(((((((..(.....)..))))))).(((-((((.((--(((-((((..(((...)))..)))-)))))))))))))))-))))... ( -33.70) >DroEre_CAF1 374 105 + 1 AGCGCUGGCCAAAUGGCAAGCUAGAAAACUGUGUCACUUU-UUCUGGCUUCUCCUUUUU-UUU-UUUGUUUUGAAUCAGCUGGAGAAGAUGGAAAGGGCAAGCGCAAA .(((((.(((.......(((((((((((..(.....).))-))))))))).(((..(((-(((-(..(((.......)))..))))))).)))...))).)))))... ( -33.90) >consensus AGCGCUGGCCGAAUGGCAAACUAGAAAACUGUGUCACUUU_UUCUGACUUCUUUUUCAU_UUU_UUUUUUCUGAAUCAGCUGGAGAAGAUGGAAAGGGCAAGCGCAAA .(((((.(((...(((((...(((....)))))))).....(((((.(((((((...........................))))))).)))))..))).)))))... (-24.31 = -23.93 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:24 2006