Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,661,697 – 10,661,830 |
Length | 133 |
Max. P | 0.988138 |
Location | 10,661,697 – 10,661,817 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.22 |
Mean single sequence MFE | -37.08 |
Consensus MFE | -34.75 |
Energy contribution | -35.09 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -3.25 |
Structure conservation index | 0.94 |
SVM decision value | 2.11 |
SVM RNA-class probability | 0.988138 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10661697 120 + 27905053 UUUAAAUUUCAUUCAGUUCAGCAGUUCAGUUUUCUCCUGUGUAGACCAGAAAACGACUUAACACACGUCGUAUGCGCAAUAUUCAUGAGCUGAGCUGCAUUACGCAUACGCCAGGUGUGC ...............((...((((((((((((.....((((((.........(((((.........))))).))))))........))))))))))))...))((((((.....)))))) ( -33.12) >DroSec_CAF1 3362 114 + 1 UUUAAAUUUUGUUU------GCAGUUCAGUUUUCUCCUGUGUAGACCAGAAAACGACUUGACACAAGUCGUAUGCGCAAUAUUCAUGAGCUGAGCUGCAUUACGCAUACGCCAGGUGUGC ..........((.(------((((((((((((.....((((((.........((((((((...)))))))).))))))........)))))))))))))..))((((((.....)))))) ( -38.72) >DroSim_CAF1 3412 114 + 1 UUUAAAUUUUGUUU------GCAGUUCAGUUUUCUUCUGUGUAGACCAGAAAACGACUUGACACAAGUCGUAUGCGCAAUAUUCAUGAGCUGAGCUGCAUUACGCAUACGCCAGGUGUGC ..........((.(------((((((((((((..(((((.(....)))))).((((((((...))))))))...............)))))))))))))..))((((((.....)))))) ( -39.40) >consensus UUUAAAUUUUGUUU______GCAGUUCAGUUUUCUCCUGUGUAGACCAGAAAACGACUUGACACAAGUCGUAUGCGCAAUAUUCAUGAGCUGAGCUGCAUUACGCAUACGCCAGGUGUGC ....................((((((((((((.....((((((.........(((((((.....))))))).))))))........)))))))))))).....((((((.....)))))) (-34.75 = -35.09 + 0.33)
Location | 10,661,697 – 10,661,817 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.22 |
Mean single sequence MFE | -34.53 |
Consensus MFE | -32.39 |
Energy contribution | -32.17 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.75 |
Structure conservation index | 0.94 |
SVM decision value | 1.79 |
SVM RNA-class probability | 0.977503 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10661697 120 - 27905053 GCACACCUGGCGUAUGCGUAAUGCAGCUCAGCUCAUGAAUAUUGCGCAUACGACGUGUGUUAAGUCGUUUUCUGGUCUACACAGGAGAAAACUGAACUGCUGAACUGAAUGAAAUUUAAA ((((((....(((((((((((((....(((.....))).)))))))))))))..))))(((.(((..(((((((.......)))))))..))).))).)).................... ( -34.70) >DroSec_CAF1 3362 114 - 1 GCACACCUGGCGUAUGCGUAAUGCAGCUCAGCUCAUGAAUAUUGCGCAUACGACUUGUGUCAAGUCGUUUUCUGGUCUACACAGGAGAAAACUGAACUGC------AAACAAAAUUUAAA ((((((..(((((((((((((((....(((.....))).))))))))))))).)).)))(((.((..(((((((.......)))))))..)))))..)))------.............. ( -34.20) >DroSim_CAF1 3412 114 - 1 GCACACCUGGCGUAUGCGUAAUGCAGCUCAGCUCAUGAAUAUUGCGCAUACGACUUGUGUCAAGUCGUUUUCUGGUCUACACAGAAGAAAACUGAACUGC------AAACAAAAUUUAAA ((((((..(((((((((((((((....(((.....))).))))))))))))).)).)))(((.((..(((((((.......)))))))..)))))..)))------.............. ( -34.70) >consensus GCACACCUGGCGUAUGCGUAAUGCAGCUCAGCUCAUGAAUAUUGCGCAUACGACUUGUGUCAAGUCGUUUUCUGGUCUACACAGGAGAAAACUGAACUGC______AAACAAAAUUUAAA ((((((..(.(((((((((((((....(((.....))).))))))))))))).)..))))..(((..(((((((.......)))))))..))).....)).................... (-32.39 = -32.17 + -0.22)
Location | 10,661,737 – 10,661,830 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 98.57 |
Mean single sequence MFE | -29.40 |
Consensus MFE | -27.45 |
Energy contribution | -27.57 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.67 |
Structure conservation index | 0.93 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588731 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10661737 93 - 27905053 AUUGGCAGUCGCUGCACACCUGGCGUAUGCGUAAUGCAGCUCAGCUCAUGAAUAUUGCGCAUACGACGUGUGUUAAGUCGUUUUCUGGUCUAC .....(((.((((((((((....(((((((((((((....(((.....))).)))))))))))))..))))))..)).))....)))...... ( -30.00) >DroSec_CAF1 3396 93 - 1 AUUGGCAGUCGCUGCACACCUGGCGUAUGCGUAAUGCAGCUCAGCUCAUGAAUAUUGCGCAUACGACUUGUGUCAAGUCGUUUUCUGGUCUAC ....((((...))))..(((.(((((((((((((((....(((.....))).))))))))))))((((((...)))))))))....))).... ( -29.10) >DroSim_CAF1 3446 93 - 1 AUUGGCAGUCGCUGCACACCUGGCGUAUGCGUAAUGCAGCUCAGCUCAUGAAUAUUGCGCAUACGACUUGUGUCAAGUCGUUUUCUGGUCUAC ....((((...))))..(((.(((((((((((((((....(((.....))).))))))))))))((((((...)))))))))....))).... ( -29.10) >consensus AUUGGCAGUCGCUGCACACCUGGCGUAUGCGUAAUGCAGCUCAGCUCAUGAAUAUUGCGCAUACGACUUGUGUCAAGUCGUUUUCUGGUCUAC ....((((...))))..(((.(((((((((((((((....(((.....))).))))))))))))((((((...)))))))))....))).... (-27.45 = -27.57 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:23 2006