Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,660,657 – 10,660,756 |
Length | 99 |
Max. P | 0.812751 |
Location | 10,660,657 – 10,660,756 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 98.00 |
Mean single sequence MFE | -26.73 |
Consensus MFE | -26.70 |
Energy contribution | -26.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.73 |
Structure conservation index | 1.00 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812751 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10660657 99 - 27905053 CACGUUUGUGCGUUUGAAGCUGUUUUUUGGGGCGGCAAC-AAAAAGUCAACUGGCAAAGGGGAUAAUUUACAAGCUUCACAAACUGCAUAAGUGCAAAAC ...(((((((.(((((..(((((((....)))))))...-.....(((..((.....))..)))......)))))..)))))))((((....)))).... ( -26.90) >DroSec_CAF1 2307 99 - 1 CACGUUUGUGCGUUUGAAGCUGUUU-UUGGGGCGGCAACCAAAAAGUCAACUGGCAAAGGGGAUAAUUUACAAGCAUCACAAACUGCAUAAGUGCAAAAC ...(((((((.(((((..((((((.-....)))))).........(((..((.....))..)))......)))))..)))))))((((....)))).... ( -26.40) >DroSim_CAF1 2342 100 - 1 CACGUUUGUGCGUUUGAAGCUGUUUUUUGGGGCGGCAACCAAAAAGUCAACUGGCAAAGGGGAUAAUUUACAAGCAUCACAAACUGCAUAAGUGCAAAAC ...(((((((.(((((..(((((((....))))))).........(((..((.....))..)))......)))))..)))))))((((....)))).... ( -26.90) >consensus CACGUUUGUGCGUUUGAAGCUGUUUUUUGGGGCGGCAACCAAAAAGUCAACUGGCAAAGGGGAUAAUUUACAAGCAUCACAAACUGCAUAAGUGCAAAAC ...(((((((.(((((..(((((((....))))))).........(((..((.....))..)))......)))))..)))))))((((....)))).... (-26.70 = -26.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:20 2006