Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,660,519 – 10,660,619 |
Length | 100 |
Max. P | 0.968096 |
Location | 10,660,519 – 10,660,619 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -27.93 |
Consensus MFE | -26.70 |
Energy contribution | -27.37 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.60 |
Structure conservation index | 0.96 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.968096 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10660519 100 + 27905053 UGGCUAAGUGCUUGAAAAUGUUAUUAGUUUUAAUUAAUUUUAAAUGUCAGAGGGCUAAAACGCGGUAACCGGUAACUGUCCUCAUCACGCAAACGGCCAA (((((...(((.(((...((..((((((....))))))..)).......((((((....((.(((...)))))....)))))).))).)))...))))). ( -27.70) >DroSec_CAF1 2169 100 + 1 UGGCUAAGUGCUUGAAAAUGUUAUUAGUUUUAAUUAAUUUUAAAUGGCAGAGGGCUAAAACACGGUAACCGGUAAGUGUCCUCAUCACGCAACCGGCCAA (((((...(((.(((...(((((((((((......))))...)))))))((((((....((.(((...)))))....)))))).))).)))...))))). ( -29.70) >DroSim_CAF1 2204 100 + 1 UGGCUAAGUGCUUGAAAAUGUUAUUAGUUUUAAUUAAUUUUAAAUGGCAGAGGUCUAAAACACGGUAACCGGUAACUGUCCUCAUCACGCAACCGGCCAA (((((...(((.(((...(((((((((((......))))...)))))))((((.(....((.(((...)))))....).)))).))).)))...))))). ( -26.40) >consensus UGGCUAAGUGCUUGAAAAUGUUAUUAGUUUUAAUUAAUUUUAAAUGGCAGAGGGCUAAAACACGGUAACCGGUAACUGUCCUCAUCACGCAACCGGCCAA (((((...(((.(((...(((((((((((......))))...)))))))((((((....((.(((...)))))....)))))).))).)))...))))). (-26.70 = -27.37 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:19 2006