Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,658,965 – 10,659,065 |
Length | 100 |
Max. P | 0.837741 |
Location | 10,658,965 – 10,659,065 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 98.67 |
Mean single sequence MFE | -29.43 |
Consensus MFE | -26.89 |
Energy contribution | -29.00 |
Covariance contribution | 2.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.93 |
Structure conservation index | 0.91 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690000 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10658965 100 + 27905053 GGAGCGGCAGAAACGGGCUGCCAAAAAGUGCUAACUCUAAUGGCCAUAAAUUCACAGUGACCAUGAAAGUGGUGCAAAGACCUGGAUUAGCCGACAGCCU ((..((((.((..((((((((((...(((....)))....))))............((.(((((....)))))))..)).))))..)).))))....)). ( -30.70) >DroSec_CAF1 633 100 + 1 GGAGCGGCAGAAACGGGCUGCCAAAAAGUGCUAACUCUAAUGGCCAUAAAUUCACAGUGACCAUGAAAGUGGUGCAAAGACCUGGAUUAGCCGACAGCCU ((..((((.((..((((((((((...(((....)))....))))............((.(((((....)))))))..)).))))..)).))))....)). ( -30.70) >DroSim_CAF1 646 100 + 1 GGAGCGGCAAAAAAGGGCUGCCAAAAAGUGCUAACUCUAAUGGCCAUAAAUUCACAGUGACCAUGAAAGUGGUGCAAAGACCUGGAUUAGCCGACAGCCU ((..((((......(((((((((...(((....)))....))))............((.(((((....)))))))..)).)))......))))....)). ( -26.90) >consensus GGAGCGGCAGAAACGGGCUGCCAAAAAGUGCUAACUCUAAUGGCCAUAAAUUCACAGUGACCAUGAAAGUGGUGCAAAGACCUGGAUUAGCCGACAGCCU ((..((((.((..((((((((((...(((....)))....))))............((.(((((....)))))))..)).))))..)).))))....)). (-26.89 = -29.00 + 2.11)
Location | 10,658,965 – 10,659,065 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 98.67 |
Mean single sequence MFE | -29.50 |
Consensus MFE | -29.50 |
Energy contribution | -29.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.79 |
Structure conservation index | 1.00 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837741 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10658965 100 - 27905053 AGGCUGUCGGCUAAUCCAGGUCUUUGCACCACUUUCAUGGUCACUGUGAAUUUAUGGCCAUUAGAGUUAGCACUUUUUGGCAGCCCGUUUCUGCCGCUCC .(((((((((((......))))..(((...(((((.(((((((.((......))))))))).)))))..)))......)))))))............... ( -29.50) >DroSec_CAF1 633 100 - 1 AGGCUGUCGGCUAAUCCAGGUCUUUGCACCACUUUCAUGGUCACUGUGAAUUUAUGGCCAUUAGAGUUAGCACUUUUUGGCAGCCCGUUUCUGCCGCUCC .(((((((((((......))))..(((...(((((.(((((((.((......))))))))).)))))..)))......)))))))............... ( -29.50) >DroSim_CAF1 646 100 - 1 AGGCUGUCGGCUAAUCCAGGUCUUUGCACCACUUUCAUGGUCACUGUGAAUUUAUGGCCAUUAGAGUUAGCACUUUUUGGCAGCCCUUUUUUGCCGCUCC .(((((((((((......))))..(((...(((((.(((((((.((......))))))))).)))))..)))......)))))))............... ( -29.50) >consensus AGGCUGUCGGCUAAUCCAGGUCUUUGCACCACUUUCAUGGUCACUGUGAAUUUAUGGCCAUUAGAGUUAGCACUUUUUGGCAGCCCGUUUCUGCCGCUCC .(((((((((((......))))..(((...(((((.(((((((.((......))))))))).)))))..)))......)))))))............... (-29.50 = -29.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:15 2006