Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,657,017 – 10,657,119 |
Length | 102 |
Max. P | 0.542820 |
Location | 10,657,017 – 10,657,119 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 88.48 |
Mean single sequence MFE | -16.20 |
Consensus MFE | -12.74 |
Energy contribution | -12.43 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.21 |
Mean z-score | -1.42 |
Structure conservation index | 0.79 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542820 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10657017 102 - 27905053 CAUCCUGCUGCAACAAAUUAAAUUGACCUAUUGUCUCAUGACUAAUCAUAUUAAUUAAUU-UACAAA-UGCAUUGCGCACGUGAAAAUGUUGCC-UAACCAAUCA .........((((((((((((..(((......(((....)))...)))..))))))..((-(((...-(((.....))).)))))..)))))).-.......... ( -16.00) >DroSec_CAF1 6066 102 - 1 CAUCCUGCUGCAACAAAUUAAAUUGACCUAUUGUCUCAUGGCUAAUCAUAUUAAUUAAUU-UACAAA-UGCAUUGCGCACGUGAAAAUGUUGCC-UAACCAAUCA .........((((((.........(((.....)))((((((((((((((..(((.....)-))...)-)).)))).)).)))))...)))))).-.......... ( -16.20) >DroEre_CAF1 5858 104 - 1 CACCCUGCUGCAACAAAUUUAAUUGACUUAUUGUCUCAUGGCUAAUCAUAUCAAUUAAUUUUAUAAA-AACAACGCGCAUGUGAAACUGUUGCCUUAAACAAUCA .........((((((...((((((((..(((((((....))).))).)..)))))))).........-.....(((....)))....))))))............ ( -15.00) >DroYak_CAF1 6111 105 - 1 CAUCCUGCUGCAACAUAUUUAAUUGGCUCAUUGUCUCAUGGCUAGUCAUAUCAAUUAAUUUUAUAAAAAACAUCGCGCACGUGAAAAUGUUGCCUUAACCAAUCC .........(((((((.....((((((.(((......)))))))))..........................((((....))))..)))))))............ ( -17.60) >consensus CAUCCUGCUGCAACAAAUUAAAUUGACCUAUUGUCUCAUGGCUAAUCAUAUCAAUUAAUU_UACAAA_AACAUCGCGCACGUGAAAAUGUUGCC_UAACCAAUCA .........((((((...((((((((...((((((....))).)))....))))))))..............((((....))))...))))))............ (-12.74 = -12.43 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:09 2006