Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,465,586 – 1,465,699 |
Length | 113 |
Max. P | 0.591408 |
Location | 1,465,586 – 1,465,699 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.41 |
Mean single sequence MFE | -27.37 |
Consensus MFE | -21.78 |
Energy contribution | -22.54 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.11 |
Mean z-score | -1.51 |
Structure conservation index | 0.80 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591408 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1465586 113 - 27905053 CUGCACUUUCCUACGAAGGUGCCAGCUGCAACGCACGAAACUCAAAUGUUCGUUAAUUCGUUUAGUACACAACGCAUUUGCAAUGGUUUUUUAAAUAUACAUUUGUGAAUGUG------- ..((((((((....))))))))..((((.((((.(((((.(......)))))).....))))))))......((((((..(((((..............)).)))..))))))------- ( -27.44) >DroSec_CAF1 38132 113 - 1 CUGCACUUUCCUGCGAAGGUGCCAGCUGCAACGCACGAAACUCAAAUGUUCGUUAAUUCGUUUAGUACACAACGCAUUUGCAAUGGUUUUUUAAAUAUACAUUUGUGAAUGUG------- ..((((((((....))))))))..((((.((((.(((((.(......)))))).....))))))))......((((((..(((((..............)).)))..))))))------- ( -27.44) >DroSim_CAF1 36409 113 - 1 CUGCACUUUCCUGCGAAGGUGCCAGCUGCAACGCACGAAACUCAAAUGUUCGUUAAUUCGUUUAGUACACAACGCAUUUGCAAUGGUUUUUUAAAUAUACAUUUGUGAAUGUG------- ..((((((((....))))))))..((((.((((.(((((.(......)))))).....))))))))......((((((..(((((..............)).)))..))))))------- ( -27.44) >DroEre_CAF1 39871 119 - 1 CUGCACCUUCCUAUGAAGGUGCAAGCUUCAACGCACGAAACUCAAAAGUUCGUUAAUUCGCUUAGUACACAGCGCAUUUGCAAUGAUUUUUUAAAUAUACAUAUGUGAAUGUGAGUUCU- .(((((((((....))))))))).((......))(((((.((....))))))).((((((((........)))(((((..(((((..............))).))..))))))))))..- ( -30.14) >DroYak_CAF1 38269 117 - 1 CUGCACUUUCCUAUAAAGGUGUAAGCUUCAACGCGCGAAACUCAAAAGUUCGUUGAUUCGUUUAGUACACAGCGCAUUUGAAAUAAUUUU---AACAUGCAUAUGUGAGUUUGAGUUCUU .((((((((......))))))))(((((.(((..(((((..((((.......)))))))))......((((..(((((((((.....)))---)).))))...)))).))).)))))... ( -24.40) >consensus CUGCACUUUCCUACGAAGGUGCCAGCUGCAACGCACGAAACUCAAAUGUUCGUUAAUUCGUUUAGUACACAACGCAUUUGCAAUGGUUUUUUAAAUAUACAUUUGUGAAUGUG_______ ..((((((((....))))))))..((((.((((.(((((.(......)))))).....))))))))......(((((((((((((..............))).))))))))))....... (-21.78 = -22.54 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:06 2006