| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,653,451 – 10,653,560 |
| Length | 109 |
| Max. P | 0.532609 |
| Location | 10,653,451 – 10,653,560 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 81.09 |
| Mean single sequence MFE | -31.06 |
| Consensus MFE | -22.12 |
| Energy contribution | -22.68 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532609 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10653451 109 + 27905053 ACGUCAAACAGUCAACAAGUAAAUCGGCGA-CUCAGCGGUAUC-ACGUCUGUCUGUCCUCGCGACAUUUGGCAGACUGGCUGGCUGACUUACUCAAACGAACACUGAAUGC ..((((..((((((....((....(.((..-....)).)....-))(((((((((((.....))))...)))))))))))))..))))....................... ( -30.30) >DroSec_CAF1 2454 109 + 1 ACGUGAAACAGUCAACAAGUAAAUCGGCGA-CUCAGCGUUAUC-ACGUCUGUCUGUCCUCGCGACAUUUGGCAGACUGGCUGGCUGACUUACUCAAACAAACACUGAAUGC ........((((.....(((((.(((((..-..((((((....-))(((((((((((.....))))...)))))))..))))))))).))))).........))))..... ( -28.24) >DroSim_CAF1 2430 109 + 1 ACGUCAAACAGUCAACAAGUAAAUCGGCGA-CUCAGCGGUAUC-ACGUCUGUCUGUCCUCGCGACAUUUGGCAGACUGGCUGGCUGACUUACUCAAACGAACACUGAAUGC ..((((..((((((....((....(.((..-....)).)....-))(((((((((((.....))))...)))))))))))))..))))....................... ( -30.30) >DroEre_CAF1 2482 109 + 1 ACGUCAAACAGUCAACAAGUAAAUCGGCGA-GUCAGUGGAAUC-ACGUCUGUCUGACUUCGCGACAUUUGGCAGACUGGCUGGCUGACUUGUUCAAACGAGCACUGAACGC ..((((..(((((..(((((...(((.(((-(((((((((...-...)))).))))).)))))).)))))...)))))..)))).....(((((....)))))........ ( -33.90) >DroYak_CAF1 2488 109 + 1 ACGUCAAACAGUCAACAAGUAAAUCGGCGA-CUUAGUGCUAUC-ACGUCUGUCUGUCUUCGCGACAUUUGGCAGACUGGCUGGCUGACUUUUUCAAACGAACACCGAAUGC ..((((..((((((...((((....(....-)....))))...-..(((((((((((.....))))...)))))))))))))..))))....................... ( -29.90) >DroAna_CAF1 2430 96 + 1 UUUUCGAGAAAUCAACAGGCUAAUUAGCGAAGUCAGCGGAAUCAACGUCUGCCCGAGUUGGGAGCACGCGGCAGACUGGCUGGCUAAAAGCCUCA---------------C .....((....))...(((((..(((((..((((((((.......))((((((((.((.....)).)).)))))))))))).))))).)))))..---------------. ( -33.70) >consensus ACGUCAAACAGUCAACAAGUAAAUCGGCGA_CUCAGCGGUAUC_ACGUCUGUCUGUCCUCGCGACAUUUGGCAGACUGGCUGGCUGACUUACUCAAACGAACACUGAAUGC ..((((..((((((............((.......)).........(((((((((((.....))))...)))))))))))))..))))....................... (-22.12 = -22.68 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:01 2006