Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,635,895 – 10,635,989 |
Length | 94 |
Max. P | 0.733663 |
Location | 10,635,895 – 10,635,989 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 80.69 |
Mean single sequence MFE | -23.78 |
Consensus MFE | -14.02 |
Energy contribution | -13.30 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.38 |
Mean z-score | -2.08 |
Structure conservation index | 0.59 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.733663 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10635895 94 - 27905053 GAUGACAACUGUCAAGUGAC----GGAAUCGGCAAAGCC-----AAAAGUGAUAUAAAAAACAUUUGCAGUCGGCUGCGGAUGGCACCAAA-AAAAGCGGUCAC ..((((....)))).(((((----.(....(((...)))-----....(((..........(((((((((....))))))))).)))....-.....).))))) ( -26.20) >DroPse_CAF1 9055 88 - 1 GCCGACAACUGUCAACUGGUGGCCGGAGGUGGCAAA-----------UGAAACGAAA--AACUUUUACAGUCCGCUGCGGAUGACACCAA---AAAUCGAAAUC ...(((....)))...(((((.(((..(((((....-----------(((((.....--...)))))....))))).)))....))))).---........... ( -20.90) >DroSec_CAF1 8260 93 - 1 GAUGACAACUGUCAACUGAC----GGAAUCGGCAAAGCC-----AAAAGUGAUAUAA--AACAUUUGCAGUCGGCUGCGGAUGACACCAAAAAAAAGCGGUCAC ..((((..(((((....)))----((....(((...)))-----.............--..(((((((((....)))))))))...)).......))..)))). ( -25.70) >DroSim_CAF1 8442 92 - 1 GAUGACAACUGUCAACUGAC----GGAAUCGGCAAAGCC-----AAAAGUGAUAUAA--AACAUUUGCAGUCGGCUGCGGAUGACACCAAA-AAAAGCGGUCAC ..((((..(((((....)))----((....(((...)))-----.............--..(((((((((....)))))))))...))...-...))..)))). ( -25.70) >DroEre_CAF1 8315 96 - 1 GAUGACAACUGUCAACUGGC----GGAAUCGGCAAAGUGAUAUAAAAAGUGAUAUAA--AACAUUUGCAGUCGGUUGCGGAUGACACCAAA--AAAGCGGUCAC ..((((..((......(((.----(..(((.((((..((((.....(((((......--..)))))...)))).)))).)))..).)))..--..))..)))). ( -23.80) >DroYak_CAF1 8384 85 - 1 GAUGAAAACUGUCAACUGGC----GGAAUCGGCAAAGUGA------------UAUAA--AACAUUUGCAGUCGGCUGCGGAUGACACCAAA-AAAAGCGGUCAC (((......(((((..((.(----(....)).))...)))------------))...--..(((((((((....)))))))))........-.......))).. ( -20.40) >consensus GAUGACAACUGUCAACUGAC____GGAAUCGGCAAAGCC_____AAAAGUGAUAUAA__AACAUUUGCAGUCGGCUGCGGAUGACACCAAA_AAAAGCGGUCAC (((..(....(((....)))....)..)))...............................(((((((((....)))))))))..................... (-14.02 = -13.30 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:58 2006