Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,635,481 – 10,635,578 |
Length | 97 |
Max. P | 0.538428 |
Location | 10,635,481 – 10,635,578 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 79.53 |
Mean single sequence MFE | -35.15 |
Consensus MFE | -14.72 |
Energy contribution | -14.92 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.21 |
Mean z-score | -2.43 |
Structure conservation index | 0.42 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538428 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10635481 97 - 27905053 AGGCAAGAAACUGAAGCGCAAGUCCAAGUGGCGUCAACUUUUUGGCCAAUGUUGGUG------GAAGAAGAGACGACGCCAAAGGAGCUAUCAGGAUUAUUGG ...(((....(((((((.....(((...(((((((..((((((..(((.......))------)..))))))..)))))))..)))))).)))).....))). ( -33.10) >DroPse_CAF1 8693 103 - 1 GCCCAGCCAGCGCCCACGCAGAACCAAGUGGCGGCGUCUGCUGGGCGCCUGCUGGUGGCGGCGGAAACGGCGCCGUCGCCCACGCAGCUACAAAGAUUACUGG (((((((..(((((..(((........)))..)))))..)))))))((.(((.((((((((((.......))))))))))...)))))............... ( -52.60) >DroSec_CAF1 7846 97 - 1 AGGCAAGAAACUGAAGCGCAAGUCAAAGUGGCGUCAACUUUUUGGCCAAUGUUGGUG------GAAGAAGAGACGACGCCAAAGGAGCUAUCAGGAUUAUUGG ...(((....(((((((.....((....(((((((..((((((..(((.......))------)..))))))..)))))))...))))).)))).....))). ( -30.50) >DroSim_CAF1 8028 97 - 1 AGGCAAGAAACUGAAGCGCAAGUCAAAGUGGCGUCAACUUUUUGGCCAAUGCUGGUG------GAAAAAGAGACGACGCCAAAGGAGCUAUCAGGAUUAUUGG ...(((....(((((((.....((....(((((((..((((((..(((.......))------)..))))))..)))))))...))))).)))).....))). ( -30.10) >DroEre_CAF1 7901 97 - 1 AGGCAAGAAACUGCAGCGCAGGUCCAAGUGGCGUCAGCUUUUUGGCCACUGUUGGAG------GAAGAAGCGACGACGCCAGAGGAGCUAUCAGGGCUAUUGG ..(((......)))(((.(((.(((...(((((((.(((((((..(((....)))..------.)))))))...)))))))..))).))....).)))..... ( -33.20) >DroYak_CAF1 7970 97 - 1 GGGCAAGAAACUCCAACGCAAGUCAAAGUGGCGUCAGCUUUUUGGCCAAUGUUGGUG------GCAGAAGCGGCGACGCCAAAGGAACUAUCAGGGCUAUUGG .(((..((...(((.((....)).....(((((((.(((((((.((((....)))).------).))))))...)))))))..)))....))...)))..... ( -31.40) >consensus AGGCAAGAAACUGAAGCGCAAGUCAAAGUGGCGUCAACUUUUUGGCCAAUGUUGGUG______GAAGAAGAGACGACGCCAAAGGAGCUAUCAGGAUUAUUGG ...(((...(((...((....))...)))((((((..(.....)((((....))))..................))))))...................))). (-14.72 = -14.92 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:57 2006