Locus 3902

Sequence ID 3R_DroMel_CAF1
Location 10,632,896 – 10,632,988
Length 92
Max. P 0.831450
window6248

overview

Window 8

Location 10,632,896 – 10,632,988
Length 92
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 72.96
Mean single sequence MFE -35.27
Consensus MFE -21.97
Energy contribution -22.47
Covariance contribution 0.50
Combinations/Pair 1.23
Mean z-score -1.45
Structure conservation index 0.62
SVM decision value 0.72
SVM RNA-class probability 0.831450
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10632896 92 - 27905053
AACAUGUUGGAUCGUCCGAACUUCUGGGUUGAGGGCAGCUUGGUUCUGCGUUCCAGUUUGGAUGGCAUUCGAGCCAAUUUGCCAUAGG----CCAA--------------------
......((((.....)))).......((((...(((((.((((((((((..(((.....)))..)))...))))))).)))))...))----))..-------------------- ( -32.00)
>DroVir_CAF1 5809 102 - 1
AACAUGCUAGAUCGUCCCAACUUUUGGGUGGAGGGCAGCCUUGUGCUGCGCUCGAGCCUGGAUGGCAUACGUGCCACAUUGCCAUAGG----CACAG--UACU--------CGUCA
..((.(((....((.((((.....))))))(((.(((((.....))))).))).))).))(((((..((((((((...........))----))).)--)).)--------)))). ( -36.00)
>DroPse_CAF1 6447 108 - 1
AACAUGCUGGAUCGACCCAAUUUCUGGGUGGAGGGCAGCUUGGUGCUGCGCUCCAGUCUGGACGGCAUUCGAGCCACGUUGCCAUAGG----CCCCG--CC--CCCGCUCCCGCAC
....(((.(((.(((((((.....)))))((((.(((((.....))))).)))).(((((...((((..((.....)).)))).))))----)....--..--..)).))).))). ( -44.30)
>DroGri_CAF1 6145 107 - 1
AAUAUGCUCGAUCGUCCCAACUUUUGGGUGGAGGGCAGUCUGGUGUUGCGCUCCAGUUUGGAUGGCAUACGUACCACAUUGCCAUAGG----CAUAGAGUUGC----CUU-CCACA
................(((.....)))((((((((((((((((((.((((..(((.......)))....)))).)))..((((...))----)))))).))))----)))-)))). ( -36.40)
>DroWil_CAF1 30476 103 - 1
AAUAUGCUAGAUCGUCCGAAUUUUUGGGUGGAGGGCAGUCUCGUUUUACGUUCCAGUUUGGAUGGCACUCGAACCACGUUGCCAUAGAGAUCCCAA------------UGUAG-AU
......(((.(((..((((....))))..)).(((..(((((.........(((.....)))(((((..((.....)).)))))..))))))))..------------).)))-.. ( -26.20)
>DroAna_CAF1 5891 92 - 1
AAUAUGUUAGAUCGACCCAACUUUUGGGUGGAGGGCAGCUUGGUGCUGCGUUCCAGUUUGGAUGGCAAUCGAGCCUCCUUGCCAUAGG----UCAA--------------------
.........((((.(((((.....)))))((((.(((((.....))))).)))).((..(((.(((......))))))..))....))----))..-------------------- ( -36.70)
>consensus
AACAUGCUAGAUCGUCCCAACUUUUGGGUGGAGGGCAGCCUGGUGCUGCGCUCCAGUUUGGAUGGCAUUCGAGCCACAUUGCCAUAGG____CCAA_______________CG___
......((((((...((((.....))))(((((.(((((.....))))).)))))))))))((((((............))))))............................... (-21.97 = -22.47 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:54 2006