Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 296,971 – 297,070 |
Length | 99 |
Max. P | 0.977428 |
Location | 296,971 – 297,070 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 97.58 |
Mean single sequence MFE | -30.72 |
Consensus MFE | -28.96 |
Energy contribution | -28.72 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.67 |
Structure conservation index | 0.94 |
SVM decision value | 1.79 |
SVM RNA-class probability | 0.977428 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 296971 99 + 27905053 CACCUCGCACGCUUUUAAGCCAACUGACGACUGGUCGGAUGUGCGUCUGAACCUUAUCAGGCAGCGGCGGCGACAGCCGUCAACAUCGAAACCUCAACC ......(((((((....)))...(((((.....)))))..))))((((((......))))))...((((((....)))))).................. ( -33.00) >DroSec_CAF1 32338 99 + 1 CACCUCGCACGCUUUUAAGCCAACUGACGACUGGUCGGAUGUGCGUCUGAACCUUAUCAGGCAGCGGUGGCGACAACCGUCAACAUCGAAACCUCAACC ......(((((((....)))...(((((.....)))))..))))((((((......))))))..(((((..(((....)))..)))))........... ( -30.40) >DroSim_CAF1 34043 99 + 1 CACCUCGCACGCUUUUAAGCCAACUGACGACUGGUCGGAUGUGCGUCUGAACCUUAUCAGGCAGCGGUGGCGACAACCGUCAACAUCGAAACCUCAACC ......(((((((....)))...(((((.....)))))..))))((((((......))))))..(((((..(((....)))..)))))........... ( -30.40) >DroEre_CAF1 34739 99 + 1 CACCUCGCACGCUUUUAAGCCAACUGACGACUGGUCGGAUGUGCGUCUGAACCUUAUCAGGCAGCGGCGGCGAAAACCGUCAACAUCAAAACUUCAACC ......((.((((.....((((.(((((.....))))).)).))((((((......))))))))))))((((.....)))).................. ( -29.80) >DroYak_CAF1 36533 99 + 1 CACCUCGCACGCUUUUAAGCCAACUGACGACUGGUCGGAUGUGCGUCUGAACCUUAUCAGGCAGCGGCGGCGAAAACCGUCAACAUCGAAACCUCAACC ....((((.((((.....((((.(((((.....))))).)).))((((((......))))))))))))((((.....))))......)).......... ( -30.00) >consensus CACCUCGCACGCUUUUAAGCCAACUGACGACUGGUCGGAUGUGCGUCUGAACCUUAUCAGGCAGCGGCGGCGACAACCGUCAACAUCGAAACCUCAACC ......((.((((.....((((.(((((.....))))).)).))((((((......))))))))))))((((.....)))).................. (-28.96 = -28.72 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:03 2006