Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,614,550 – 10,614,667 |
Length | 117 |
Max. P | 0.735413 |
Location | 10,614,550 – 10,614,667 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.88 |
Mean single sequence MFE | -40.65 |
Consensus MFE | -33.44 |
Energy contribution | -32.97 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.19 |
Mean z-score | -2.17 |
Structure conservation index | 0.82 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.735413 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10614550 117 + 27905053 AACUCGCACAGCGGCAAGAAAGAGCCAAAGAGCGGAGAGAACAACAACGGAAGCGUUGUGCAAGACUCCGGCUUCUCAACGGAGACCAGUUCCUCCAAGGAGGGCCACAGUGCCUC---C ..(((((...))(((........)))...))).((((.((((.((((((....))))))......(((((.........)))))....))))))))..(((((((....)).))))---) ( -41.40) >DroPse_CAF1 95413 117 + 1 AAUUCGCAUAGCGGCAAGAAAGAGCCAAAGAGCGGAGAGAACAACAACGGCAGCGUUGUGCAGGACUCCGGCUUCUCAACGGAGACCAGUUCUUCCAAGGAGGGACACAGCGCCUC---C ..(((((.....(((........))).....)))))............((..(((((((...((.(((((.........))))).)).(((((((....))))))))))))))..)---) ( -40.80) >DroGri_CAF1 97783 120 + 1 AAUUCGCACAGCGGCAAGAAAGAGCCAAAGAGCGGAGAGAACAACAACGGCAGCGUUGUCCAGGACUCCGGCUUCUCAACGGAGACCAGUUCCUCCAAGGAGGGUCACAGUGCCUCCUCC .....((.(...(((........)))...).))((((.((((.((((((....))))))...((.(((((.........))))).)).)))))))).((((((.........)))))).. ( -41.90) >DroWil_CAF1 68235 117 + 1 AACUCGCACAGCGGCAAAAAAGAGCCAAAGAGCGGAGAGAAUAAUAAUGGCAGUGUUGUCCAGGACUCUGGCUUCUCAACGGAGACCAGUUCUUCCAAGGAUGGACACAGUGCCUC---C ..(((((.(...(((........)))...).)).)))...........((((.(((.((((((((..((((((((.....)))).)))).)))((....)))))))))).))))..---. ( -37.40) >DroAna_CAF1 59387 117 + 1 AACUCGCACAGCGGCAAAAAAGAGCCAAAGAGCGGAGAGAACAACAACGGGAGCGUUGUCCAAGACUCCGGCUUCUCAACGGAGACCAGUUCCUCCAAGGAGGGCCACAGUGCCUC---C ..(((((...))(((........)))...))).((((.((((.((((((....))))))......(((((.........)))))....))))))))..(((((((....)).))))---) ( -40.80) >DroPer_CAF1 82952 117 + 1 AAUUCGCAUAGCGGCAAGAAAGAGCCAAAGAGCGGAGAGAACAACAACGGCAGUGUUGUGCAGGACUCCGGCUUCUCAACGGAGACCAGUUCCUCCAAGGAGGGACACAGCGCCUC---C ..(((((.....(((........))).....)))))(((.((((((.(....)))))))((.((.(((((.........))))).)).(((((((....)))))))...))..)))---. ( -41.60) >consensus AACUCGCACAGCGGCAAGAAAGAGCCAAAGAGCGGAGAGAACAACAACGGCAGCGUUGUCCAGGACUCCGGCUUCUCAACGGAGACCAGUUCCUCCAAGGAGGGACACAGUGCCUC___C .....((((((((((........)))......(((((......((((((....))))))......))))))))((((....))))...(.(((((....))))).)...))))....... (-33.44 = -32.97 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:49 2006