Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,606,023 – 10,606,113 |
Length | 90 |
Max. P | 0.931653 |
Location | 10,606,023 – 10,606,113 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 65.43 |
Mean single sequence MFE | -21.63 |
Consensus MFE | -11.79 |
Energy contribution | -12.13 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.25 |
Mean z-score | -1.65 |
Structure conservation index | 0.55 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931653 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10606023 90 + 27905053 AGUUAGGUUUUAUAUAUGUACAUAUUAUAUAUGUACAUACCUAGGUACACCAGGUAUGUGAGUGCUUGUUGUGGCUGCGCUUGUUUUC-------GG ...(((((......(((((((((((...)))))))))))..(((.((((.(((((((....))))))).)))).))).))))).....-------.. ( -25.00) >DroEre_CAF1 64824 68 + 1 AC---AUGUGUAUAC---------------GAGUAUAUAC----GUAGACCAGGUAUGUGAGUGCUUAUUGUGGCUGCGCUUGUUUUC-------GG ..---.........(---------------(((.(((..(----((((.((((((((....))))).....))))))))..))).)))-------). ( -17.30) >DroYak_CAF1 66075 82 + 1 AGUUAAGGUCUAUAC---------------AUAUGUAUACCUAGGUACACUGGGUAUGUGAGUGCUGAUUGUGACUGCGCUUGUUUUCGGUGUUCGG .....((((..((((---------------....)))))))).((.((((((((...(..(((((...........)))))..).)))))))))).. ( -22.60) >consensus AGUUAAGGUCUAUAC_______________AUGUAUAUACCUAGGUACACCAGGUAUGUGAGUGCUUAUUGUGGCUGCGCUUGUUUUC_______GG ..................................((((((((.((....))))))))))((((((...........))))))............... (-11.79 = -12.13 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:47 2006