Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,604,118 – 10,604,226 |
Length | 108 |
Max. P | 0.739939 |
Location | 10,604,118 – 10,604,226 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 88.99 |
Mean single sequence MFE | -24.82 |
Consensus MFE | -20.61 |
Energy contribution | -21.03 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.27 |
Mean z-score | -2.05 |
Structure conservation index | 0.83 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.739939 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10604118 108 + 27905053 GUUGCACUUAAGGCGCCUAUACAUUUGCCGCAAUCAAAUAAUAGCCUUAAUAAAUUUGCUUAAAUUCGCCAUAAGUGCCAACGAUUUGCUCUGCGAAUCCUGUCUAAA ((((((((((.(((((..........)).((((......................))))........))).)))))).))))(((((((...)))))))......... ( -24.45) >DroSec_CAF1 52194 108 + 1 GUUGCACUUAAGGCGCCUAAACAUUUGCCGCAAUGAAAUAAUUGCCUUAAUAAAUUUGCUUAAAUUCGCCAUAAGUGCCAGCGAUUUGCACUGCCAGUCCUGUCUAAA ...(((((((.((((..............(((((......))))).......(((((....))))))))).)))))))(((.((((.((...)).)))))))...... ( -25.20) >DroSim_CAF1 53234 108 + 1 GUUGCACUUAAGGCGCCUAAACAUUUGCCGCAAUCAAAUAAUUGCCUUAAUAAAUUUGCUUAAAUUCGCCAUAAGUGCCAGCGAUUUGCACUGCGAGUCCUGUCUAAA ...(((((((.((((..............(((((......))))).......(((((....))))))))).)))))))(((.(((((((...))))))))))...... ( -27.80) >DroEre_CAF1 63004 107 + 1 GUUGCACUUAAGGCGCCUAAACAUUUGCCGCAAUCAAAUAAUUGCCAUAAUAAAUUUGCUUAAAUUCGCCAUAAGUGCCAGCGAUUUGCUCU-CAAGUCCUGUCCAAA ...(((((((.((((..............(((((......))))).......(((((....))))))))).)))))))(((.((((((....-)))))))))...... ( -25.30) >DroYak_CAF1 64234 107 + 1 GUUGCACUUGAGGCGCCCAAACAUUUGCCGCAAUCAAAUAAUUGCCUUAAUAAAUUUGCUUAAAUUCGCCAUAAGUGCCAGCGAUUUGCACU-CGAGUCCUGUCUAAA ...(((((((.((((..(((....)))..(((((......))))).....................)))).)))))))(((.((((((....-)))))))))...... ( -24.80) >DroAna_CAF1 48798 100 + 1 -------CGAAGGCGCCUAAACAUAUGCCGCAAUCAAAUAAUUGCCUUAAUAAAUUUGCUUGAAUUCGUUUCAAGUGCUAGCGAUUUUCAGC-AAAGUCCUGCCUAAA -------...((((...............(((((......))))).........((((((.(((.(((((.........))))).))).)))-))).....))))... ( -21.40) >consensus GUUGCACUUAAGGCGCCUAAACAUUUGCCGCAAUCAAAUAAUUGCCUUAAUAAAUUUGCUUAAAUUCGCCAUAAGUGCCAGCGAUUUGCACU_CGAGUCCUGUCUAAA ...(((((((.((((..............(((((......))))).......(((((....))))))))).)))))))(((.((((((.....)))))))))...... (-20.61 = -21.03 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:46 2006