Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,601,164 – 10,601,255 |
Length | 91 |
Max. P | 0.993892 |
Location | 10,601,164 – 10,601,255 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 94.07 |
Mean single sequence MFE | -23.93 |
Consensus MFE | -20.98 |
Energy contribution | -21.58 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.02 |
Structure conservation index | 0.88 |
SVM decision value | 2.43 |
SVM RNA-class probability | 0.993892 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10601164 91 - 27905053 AUGGAAUUUCUUGCAGUGCACAGGUUCCCAUUGUUGCGAUUUACCUGCUUUCUGCAGCUUUAUCGAUAGUAGCCUUGGGAACAUCUAUUUA (((((....(((((...))).))(((((((..((((((((..(.((((.....)))).)..)))....)))))..))))))).)))))... ( -25.80) >DroSec_CAF1 49336 91 - 1 UUGGAAUUUCUUGCAGUGCACCGGUUCCCAUUGUUGCGAUUUACCUGCUUUCUGCAGCUUUAUCGAUAGUAGCCUUGGGAACAUCUAUUUA .((((......(((...)))...(((((((..((((((((..(.((((.....)))).)..)))....)))))..))))))).)))).... ( -25.00) >DroSim_CAF1 50361 91 - 1 UUGGAAUUUCUUGCAGUGCACCGGUUCCCAUUGUUGCGAUUUACCUGCUUUCUGCAGCUUUAUCGAUAGUAGCCUUGGGAACAUCUAUUUA .((((......(((...)))...(((((((..((((((((..(.((((.....)))).)..)))....)))))..))))))).)))).... ( -25.00) >DroEre_CAF1 60089 90 - 1 AAGGAAUUAUUU-CAGUGCACAGGCUCCCAUUGUUGCGAUUUACAUGCAUUCUGCAGCUUUAUCGAUAGUAGCCUUGGGAACAUCUAUUUA ..(((.......-....((....))(((((..((((((((.....(((.....))).....)))....)))))..)))))...)))..... ( -18.00) >DroYak_CAF1 61241 91 - 1 AUGGCAUUUUUUGCAGUGCACAGGUUCCCAUUGUUGCGAAUUACCUGCUCUCUGCAGCUUUAUCGAUAGUAGCCUUGGGAACAUCUAUUUA .(((((((......))))).)).(((((((..(((((.......((((.....))))...........)))))..)))))))......... ( -25.87) >consensus AUGGAAUUUCUUGCAGUGCACAGGUUCCCAUUGUUGCGAUUUACCUGCUUUCUGCAGCUUUAUCGAUAGUAGCCUUGGGAACAUCUAUUUA .......................(((((((..((((((((....((((.....))))....)))....)))))..)))))))......... (-20.98 = -21.58 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:45 2006