Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,598,360 – 10,598,451 |
Length | 91 |
Max. P | 0.843292 |
Location | 10,598,360 – 10,598,451 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 87.48 |
Mean single sequence MFE | -27.86 |
Consensus MFE | -23.30 |
Energy contribution | -23.08 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.14 |
Mean z-score | -2.23 |
Structure conservation index | 0.84 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843292 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10598360 91 + 27905053 GACCACAAUCGCCUUUGGCCAUUCCUGCUGACUAUC--UCCCG---UGGCCGCUGGACAGCUUUGUUGUGGUCUGGAGUCCCACUUCCAUCUCUCC (((((((((.......((((((..............--....)---)))))(((....)))...)))))))))(((((......)))))....... ( -27.27) >DroSec_CAF1 46539 93 + 1 GACCACAAUCACCUUCGGCCAUUCCUGCUGACUAUCUCUCCCG---UGGCCGCUGGACAGCUUUGUUGUGGUCUGGAGUCCCACUUCCAUCUCUCC (((((((((.......((((((.......(.....)......)---)))))(((....)))...)))))))))(((((......)))))....... ( -27.82) >DroSim_CAF1 47623 93 + 1 GACCACAAUCGCCUUCGGCCAUUCCGGCUGACUAUCUCUCCCG---UGGCCGCUAGACAGCUUUGUUGUGGUCUGGAGUCCCACUUCCAUCUCUCC (((((((((.((((.((((((...(((..((.....))..)))---))))))..))...))...)))))))))(((((......)))))....... ( -31.30) >DroEre_CAF1 57667 91 + 1 GACCACAAUCGCCUUCGGCCAUUCCUGCUGACUAUC--UGCCG---UGGCCGCUGGACAGCUUUGUUGUGGUCAGGAGUCCCACUUCCAUCUCUCC ((((((((((.((..(((((((....((.(.....)--.)).)---))))))..))...)....))))))))).((((......))))........ ( -31.20) >DroYak_CAF1 58418 91 + 1 GACCACAAUCGCCCUCGGCCAUUCCUGCCGACUAUC--UCCCG---UGGCCGCUGGACAGCUUUGUUGUGGUCAGGAGUCCCACUUCCAUCUCUCC (((((((((.((((.(((((((..............--....)---))))))..))...))...))))))))).((((......))))........ ( -28.87) >DroAna_CAF1 43347 81 + 1 GGCCACAAUCGCCUUUGGCCAU-------GACUAUC--UCCCGCUAUAGCCGCUCGACAGCUUUGUUGUGGUUAAGAGUCC----UCUGUCUCU-- (((((..........)))))..-------(((...(--((..((((((((.(((....)))...))))))))...)))...----...)))...-- ( -20.70) >consensus GACCACAAUCGCCUUCGGCCAUUCCUGCUGACUAUC__UCCCG___UGGCCGCUGGACAGCUUUGUUGUGGUCAGGAGUCCCACUUCCAUCUCUCC (((((((((.......(((((.........................)))))(((....)))...))))))))).((((......))))........ (-23.30 = -23.08 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:44 2006