Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,596,596 – 10,596,714 |
Length | 118 |
Max. P | 0.941503 |
Location | 10,596,596 – 10,596,714 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 81.14 |
Mean single sequence MFE | -25.37 |
Consensus MFE | -17.40 |
Energy contribution | -17.30 |
Covariance contribution | -0.10 |
Combinations/Pair | 1.16 |
Mean z-score | -2.39 |
Structure conservation index | 0.69 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941503 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10596596 118 + 27905053 AUUAUGCUUUUUUUUUAGAUCAAUUGCAACUUUUAUAUAGCUUUAAUUAGGGUUGUUAAAGUGUUUCAACCCUGUUAAGUUUACAUUUUCAAACGGAAAUACUUUAGUUGAAAGCAAA ....(((((((...(((((...................(((((....((((((((...........))))))))..)))))...((((((....))))))..)))))..))))))).. ( -23.20) >DroSim_CAF1 45906 114 + 1 AUUAUG--UU--UUUAAAAUCAAUUACCACUUUUAUAUAGCUUUUAUUAGGGUUGUUAGAGUUUUUCAACCCUGUGAAGCUUACCUUUUCAAACGGAAAUACUUUAGUUGAAAGCAAA ....((--((--(((((.....................((((((...((((((((...........)))))))).))))))....(((((....)))))........))))))))).. ( -24.10) >DroYak_CAF1 56633 114 + 1 AUUGUG--AU--UUAAAAAUAAAUUGCAGCAUUCAAAUUGCUUUUAUUAGGGUUGUUAACGUUUUGCAACCCUCUUAAAUAUACCUAUUCAAGCGGAAGUACUCCAGUUGAAAGCAAA .(((..--((--(((....)))))..)))........(((((((((..((((((((.........))))))))..))))........(((((..(((.....)))..)))))))))). ( -28.80) >consensus AUUAUG__UU__UUUAAAAUCAAUUGCAACUUUUAUAUAGCUUUUAUUAGGGUUGUUAAAGUUUUUCAACCCUGUUAAGUUUACCUUUUCAAACGGAAAUACUUUAGUUGAAAGCAAA .......................((((...........(((((....((((((((...........))))))))..)))))......(((((..(((.....)))..))))).)))). (-17.40 = -17.30 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:43 2006