Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,594,425 – 10,594,534 |
Length | 109 |
Max. P | 0.861095 |
Location | 10,594,425 – 10,594,534 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 95.45 |
Mean single sequence MFE | -29.10 |
Consensus MFE | -24.62 |
Energy contribution | -25.02 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.62 |
Structure conservation index | 0.85 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861095 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10594425 109 - 27905053 AGUUUUCGUAGAAGCAUUUUUGAGUUGUCUUUGGUUUUAUGGCCAAGUCAUAAGCCAAGAUCGCAGGGGGCAAUUAUUCUAGCUGCUAAUUUGAAAAGUGUACGAGCAU- ....((((((.(....((((..(((((((((.(((((.(((((...))))))))))))))).((((.(((.......)))..)))).))))..)))).).))))))...- ( -27.90) >DroSec_CAF1 42915 109 - 1 AGUUUUCGUAUAAGCAUUUUUGAGUUGUCUUUGGUUUUAUGGCCAAGUCAUAAGCCAAGAUCGCAGG-GGCAAUUAUUCUAGCUGCUAAUUUGAAAAGUGUACGAGCAUA ....((((((((....((((..(((((((((.(((((.(((((...))))))))))))))).((((.-((........))..)))).))))..)))).)))))))).... ( -29.00) >DroSim_CAF1 43777 110 - 1 AGUUUUCGUAGAAGCAUUUUUGAGUUGUCUUUGGUUUUAUGGCCAAGUCAUAAGCCAAGAUCGCAGGGGGCAAUUAUUCUAGCUGCUAAUUUGAAAAGUGUACGAGCAUA ....((((((.(....((((..(((((((((.(((((.(((((...))))))))))))))).((((.(((.......)))..)))).))))..)))).).)))))).... ( -27.90) >DroEre_CAF1 52664 109 - 1 AUGUUUCGUAGAAGCAUUUUUGAGUUGUCUUUGGUUUUAUGGCUAAGUCAUAAGCCAAGAUCGCUGGGGGCA-UUAUUCUAGCUGCUAAUUUGAAAAGUGUACGAGCAUC (((((.((((.(....((((..(((((((((.(((((.(((((...))))))))))))))).(((((((...-...)))))))....))))..)))).).))))))))). ( -31.40) >DroYak_CAF1 54356 110 - 1 AUUUUUCGUAGAAGCAUUUCUGAGUUGUCUUUGGUUUUAUGGCUAAGUCAUAAGCCAAGAUCGCUGAGGGCAAUUAUUCUAGCUGCUAAUUUGAAAAGUGUACGAGCAUC (((((((((((.(((.......(((((((((..((.((.(((((........))))).))..))..)))))))))......))).)))...))))))))........... ( -29.32) >consensus AGUUUUCGUAGAAGCAUUUUUGAGUUGUCUUUGGUUUUAUGGCCAAGUCAUAAGCCAAGAUCGCAGGGGGCAAUUAUUCUAGCUGCUAAUUUGAAAAGUGUACGAGCAUA ....(((((....((((((((.(((.(((((.(((((.(((((...))))))))))))))).)).((.(((..........))).))....).))))))))))))).... (-24.62 = -25.02 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:42 2006