Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,591,558 – 10,591,656 |
Length | 98 |
Max. P | 0.995152 |
Location | 10,591,558 – 10,591,656 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 94.99 |
Mean single sequence MFE | -19.32 |
Consensus MFE | -17.46 |
Energy contribution | -17.46 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.93 |
Structure conservation index | 0.90 |
SVM decision value | 2.55 |
SVM RNA-class probability | 0.995152 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10591558 98 + 27905053 GCCAUUUUUUACCAGUUUGACAAGUUUUUUUUUUUGCAGUCACUUGUCUGUGCUCGCUGACUACUUGGGCUUCUACUCACAACAUCUUCUUGUUGUCC (((.........((((..(((((((..((........))..))))))).......))))........)))........((((((......)))))).. ( -17.63) >DroSec_CAF1 40056 95 + 1 GCCAUU-UUUACCAGUUUGACAAGUUUUU--UUUUGCAGUCACUUGUCUGUGCCUGCUGACUACUUGGGCUUCUACUCACAACAUCUUCUUGUUGUCC (((...-.....(.....).(((((..((--....((((.(((......))).)))).))..))))))))........((((((......)))))).. ( -22.00) >DroSim_CAF1 40884 94 + 1 GCCAUU-UUUACCAGUUUGACAAGUUUU---UUUUGCAAUCACUUGUCUGUGCUCGCUGACUACUUGGGCUUCUACUCACAACAUCUUCUUGUUGUCC (((...-.....((((..(((((((..(---(.....))..))))))).......))))........)))........((((((......)))))).. ( -18.49) >DroEre_CAF1 49683 93 + 1 GCCAAU-UUUACCAGUUUGACAAGUUU----UUUUGCAGCCACUUGUCUGUGCUCGCUGACUACUUGGGCUUCUACUCACAACAUCUUCUUGUUGUCC (((...-.....(.....).(((((..----((..(((((.((......))))).)).))..))))))))........((((((......)))))).. ( -18.80) >DroYak_CAF1 51270 92 + 1 GCCAUU-UUUACCAGUUUGACAAGUUU-----UUUGCAGUCACUUGUCUGUGCUCGCUGACUACUUGGGCUUCUACUCACAACAUCUUCUUGUUGUCC (((...-.....(.....).(((((..-----((.((((.(((......))))).)).))..))))))))........((((((......)))))).. ( -19.70) >consensus GCCAUU_UUUACCAGUUUGACAAGUUUU___UUUUGCAGUCACUUGUCUGUGCUCGCUGACUACUUGGGCUUCUACUCACAACAUCUUCUUGUUGUCC (((.........((((..(((((((................))))))).......))))........)))........((((((......)))))).. (-17.46 = -17.46 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:41 2006