Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,572,124 – 10,572,243 |
Length | 119 |
Max. P | 0.589984 |
Location | 10,572,124 – 10,572,243 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.66 |
Mean single sequence MFE | -37.75 |
Consensus MFE | -25.03 |
Energy contribution | -24.65 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.40 |
Mean z-score | -1.33 |
Structure conservation index | 0.66 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589984 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10572124 119 - 27905053 UGAGGAAGAUUCGGCCCGAAGGACCAU-UGUUCCCUGAUGGCAUGACCGUAGACACCGAUGGCAAUAUCUACGUGGCCACCUUCAAUGGUGGCACCGUCUUCAAGGUCAAUCCAAGGUAG ...(((.......(((...(((.....-.....)))...))).(((((..((((...((((....))))...(..((((((......))))))..)))))....))))).)))....... ( -37.60) >DroPse_CAF1 27270 119 - 1 UCAGGAAGAUCCGACCCAAUACACCGC-UCUAUCCCGAUGGCAUGACCAUCGACACCGAGGGCAACAUCUAUGUGGCCACCUUCAAUGGUGGUUCCGUCUUCAAGGUGAAUCCAAGGUGA ...((.....)).........((((((-(((....((((((.....))))))......)))))..((((((((..((((((......))))))..))).....))))).......)))). ( -40.40) >DroEre_CAF1 30355 119 - 1 UGAGGAAAAUCCGCCCCGAAGGACCAU-UGUUCCCUGAUGGCAUGACCAUCGAUACCGAGGGCAAUAUUUACGUGGCCACCUUCAACGGUGGAACCGUCUUCAAGGUCAAUCCAAGGUGA ((((((...((((((..(((((.((((-(((((((((((((.....)))))(....).)))).)))).....))))...)))))...))))))....)))))).((.....))....... ( -37.00) >DroWil_CAF1 24936 119 - 1 UGCGUCGCAACAAU-CCACAGGAUAAUCUGAAACCCGAUGGCAUGACUGUUGAUACCGAUGGCAACAUCUAUGUGGCCACUUUCAAUGGUGCCACCGUCUUCAAGGUUAAUCCAAGGUUA (((...))).....-.....(((((((((..((..((.((((...((((((((....(.((((.(((....))).)))))..)))))))))))).))..))..))))).))))....... ( -30.50) >DroAna_CAF1 20792 119 - 1 UGAGGAGCAUCCGUCCGGAAGGCCCCC-UCUUCCCCGAUGGCAUGACCAUCGACACCGAGGGCAACCUCUACGUGGCCACCUUCAACGGCGGCACUGUCUUCAAGGUCGACCCGAAGUAA .((((.((.(((....)))..))..))-)).....((((((.....)))))).(((.((((....))))...)))(((.((......)).))).....((((..((....)).))))... ( -40.60) >DroPer_CAF1 26457 119 - 1 UCAGGAAGAUCCGACCCAAUACACCGC-UCUAUCCCGAUGGCAUGACCAUCGACACCGAGGGCAACAUCUAUGUGGCCACCUUCAAUGGUGGUUCCGUCUUCAAGGUGAAUCCAAGGUGA ...((.....)).........((((((-(((....((((((.....))))))......)))))..((((((((..((((((......))))))..))).....))))).......)))). ( -40.40) >consensus UGAGGAAGAUCCGACCCAAAGGACCAC_UCUACCCCGAUGGCAUGACCAUCGACACCGAGGGCAACAUCUACGUGGCCACCUUCAAUGGUGGCACCGUCUUCAAGGUCAAUCCAAGGUGA .....................((((..........((((((.....)))))).....((((((..(((....)))((((((......))))))...))))))..))))............ (-25.03 = -24.65 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:35 2006