Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,569,555 – 10,569,660 |
Length | 105 |
Max. P | 0.997907 |
Location | 10,569,555 – 10,569,660 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 73.24 |
Mean single sequence MFE | -31.58 |
Consensus MFE | -18.53 |
Energy contribution | -19.73 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.38 |
Mean z-score | -3.03 |
Structure conservation index | 0.59 |
SVM decision value | 2.96 |
SVM RNA-class probability | 0.997907 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10569555 105 + 27905053 CAGCUUCGGUUUUUCCCGAAGCUACACACAUUUUCAUGGU-----CUGGAAAAGUCGAUGGGAAUGGUU--------AGAAGAGACAUCCUAUUGUUCAUUUCCUCAAAACAUGAUAC .((((((((......))))))))..........(((((..-----..(((((.(.((((((((...(((--------......))).))))))))..).)))))......)))))... ( -33.10) >DroPse_CAF1 22114 103 + 1 GGUUUUUGGUUUUCUUUUCGGCAAUUUGGUUUCUUCUGGUAGUCGCUGGAAAAGAGGGAGAGAUUUGUUUUGCCAAAAGUAGAGCCAUUUUGAUAAUGAUUUA--------------- ......((((((((((((.(((((...((((((((((.....((....)).....))))))))))....)))))))))).)))))))................--------------- ( -29.30) >DroSec_CAF1 18437 105 + 1 CAGCUUCGGAUUUUCCCGAAGCUACACACAUUUUCAUGGU-----CUGGAAAAGUCGAUGGGAACGGUU--------AGAAGAGUCAUCCUAUUGUUCAUUUCCUCAAAACAUGAUUA .((((((((......))))))))..........(((((..-----..(((((.(.((((((((((....--------......))..))))))))..).)))))......)))))... ( -31.40) >DroSim_CAF1 18724 105 + 1 CAGCUUCGGAUUUUCCCGAAGCUACACACAUUUUCAUGGU-----CUGGAAAAGUCGAUGGGAACGGUU--------AGAAGAGGCAUCCUAUUGUUCAUUUCCUCAAAACAUGAUUA .((((((((......))))))))..........(((((..-----..(((((.(.((((((((...(((--------......))).))))))))..).)))))......)))))... ( -33.10) >DroEre_CAF1 27850 102 + 1 CAGCUUCGGGUUUUCCCGAAGCUACACACAUUUUUAUGGU-----CUGGAAAAGUCGGUAGGAAUGGUC--------AG---AGGCAUCCUAUUGUUCAUUUCCUGAAAACAUGAUAA .(((((((((....)))))))))..........(((((.(-----(.(((((.(.((((((((...((.--------..---..)).))))))))..).))))).))...)))))... ( -36.80) >DroYak_CAF1 28125 102 + 1 CAGCUUCGGUUUUUCCCGAUGCUACACACAUUUUUACGGU-----CUGGAAAAGUCGGUAGGAAUGGUC--------AG---AGGCAUCCUAUUGUUCAUUUCCUUAAAACAUGAUGG .(((.((((......)))).))).....((((........-----..(((((.(.((((((((...((.--------..---..)).))))))))..).))))).........)))). ( -25.81) >consensus CAGCUUCGGUUUUUCCCGAAGCUACACACAUUUUCAUGGU_____CUGGAAAAGUCGAUGGGAAUGGUU________AGAAGAGGCAUCCUAUUGUUCAUUUCCUCAAAACAUGAUAA .((((((((......))))))))..........(((((.........(((((...((((((((...(((..............))).))))))))....)))))......)))))... (-18.53 = -19.73 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:34 2006