Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,558,787 – 10,558,884 |
Length | 97 |
Max. P | 0.945960 |
Location | 10,558,787 – 10,558,884 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 69.45 |
Mean single sequence MFE | -41.22 |
Consensus MFE | -27.75 |
Energy contribution | -26.86 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.37 |
Mean z-score | -1.49 |
Structure conservation index | 0.67 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.945960 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10558787 97 + 27905053 -----------------UUUGCCGCUGCCGUUGCUCUUGGUACCGCCGCCAAAUUUGCUGCUCCUAAUGCUAAUGCCGCU---GCGAAGGCGGUAGCAGCGGCUGCUGCGGCGAAAA -----------------((((((((.(((((((((...(....)((((((...(((((.((.......((....)).)).---))))))))))))))))))))....)))))))).. ( -44.70) >DroPse_CAF1 10739 94 + 1 -----------------UGCACGACCCUCGUUCCCCUUGUGACGGCUAUUGUUUUUGUUGAUUUGAAUGCU---GCCACUCAGGCGGAGGCGGCGGCAGCGGCAG---GGGCGCAAU -----------------((((((.....)))..(((((((..((((..........)))).......((((---(((.(((.....)))..)))))))...))))---))).))).. ( -32.30) >DroSim_CAF1 7940 97 + 1 -----------------UUUGCCGCUGCCGUUGCUCUUGGUACCGCCGCCAAAUUUGCUGCUCCUAAUGCUAAUGCCGCU---GCGAAGGCGGUAGCAGCGGCUGCUGCGGCGAAAA -----------------((((((((.(((((((((...(....)((((((...(((((.((.......((....)).)).---))))))))))))))))))))....)))))))).. ( -44.70) >DroEre_CAF1 16980 114 + 1 ACUCCGAUCCGCUGACGUUUGCCGCUGCUGUUGCUCUUGGUACCGCCGCCAAAUUUGCUGCUCCUAAUGCUAAUGCCGCU---GCGAAGGCGGUAGCAGCGGCUGCUACGGCGAAGA .........(((((..((..((((((((((..((.(((.(((.(((.((.......)).)).......((....)).).)---)).)))))..)))))))))).))..))))).... ( -44.10) >DroYak_CAF1 17108 111 + 1 ---CCGGUCCGCUGGCGUUUGCCGCCGCUGUUGCUCUUGGUACCGCCGCCAAAUUUGCUGCUCCUAAUGCUAAUGCCGCU---GCGAAGGCGGUAGCAGCGGCUGCAACGGCGAAGA ---.......((.(((....)))))(((((((((....(....)(((((..........((.......))...(((..((---((....))))..)))))))).))))))))).... ( -44.70) >DroPer_CAF1 10731 94 + 1 -----------------UGCACGACCCUCGUUCCCCUUGUGGCGGCUAUUGUUUUUGUUGAUUUGAAUGCU---GCCACUCAGGCGGAGGCGGCGGCAGCGGCAG---GGGCGCAAU -----------------(((....((((..(((((((.((((((((....(((......)))......)))---)))))..))).))))((.((....)).))))---))..))).. ( -36.80) >consensus _________________UUUGCCGCCGCCGUUGCUCUUGGUACCGCCGCCAAAUUUGCUGCUCCUAAUGCUAAUGCCGCU___GCGAAGGCGGUAGCAGCGGCUGCU_CGGCGAAAA .................((((((((.(((((((((.........((((((...(((((..........((....)).......)))))))))))))))))))).))...)))))).. (-27.75 = -26.86 + -0.88)
Location | 10,558,787 – 10,558,884 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 69.45 |
Mean single sequence MFE | -37.26 |
Consensus MFE | -23.12 |
Energy contribution | -23.07 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.38 |
Mean z-score | -1.25 |
Structure conservation index | 0.62 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747512 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10558787 97 - 27905053 UUUUCGCCGCAGCAGCCGCUGCUACCGCCUUCGC---AGCGGCAUUAGCAUUAGGAGCAGCAAAUUUGGCGGCGGUACCAAGAGCAACGGCAGCGGCAAA----------------- .....(((((.((.((((((((..........))---))))))....((.((.((.((.((.......)).))....)).)).))....)).)))))...----------------- ( -37.50) >DroPse_CAF1 10739 94 - 1 AUUGCGCCC---CUGCCGCUGCCGCCGCCUCCGCCUGAGUGGC---AGCAUUCAAAUCAACAAAAACAAUAGCCGUCACAAGGGGAACGAGGGUCGUGCA----------------- ..(((((((---((.((((((((((((........)).)))))---))).......................((.......))))....))))..)))))----------------- ( -29.30) >DroSim_CAF1 7940 97 - 1 UUUUCGCCGCAGCAGCCGCUGCUACCGCCUUCGC---AGCGGCAUUAGCAUUAGGAGCAGCAAAUUUGGCGGCGGUACCAAGAGCAACGGCAGCGGCAAA----------------- .....(((((.((.((((((((..........))---))))))....((.((.((.((.((.......)).))....)).)).))....)).)))))...----------------- ( -37.50) >DroEre_CAF1 16980 114 - 1 UCUUCGCCGUAGCAGCCGCUGCUACCGCCUUCGC---AGCGGCAUUAGCAUUAGGAGCAGCAAAUUUGGCGGCGGUACCAAGAGCAACAGCAGCGGCAAACGUCAGCGGAUCGGAGU .(((((((((.((.((((((((..........))---))))))....((.((.((.((.((.......)).))....)).)).))....)).)))))...((....))....)))). ( -40.60) >DroYak_CAF1 17108 111 - 1 UCUUCGCCGUUGCAGCCGCUGCUACCGCCUUCGC---AGCGGCAUUAGCAUUAGGAGCAGCAAAUUUGGCGGCGGUACCAAGAGCAACAGCGGCGGCAAACGCCAGCGGACCGG--- ...((((((((((.((((((((..........))---))))))....((.......)).))))...))))))((((.((....((....))((((.....))))...)))))).--- ( -47.30) >DroPer_CAF1 10731 94 - 1 AUUGCGCCC---CUGCCGCUGCCGCCGCCUCCGCCUGAGUGGC---AGCAUUCAAAUCAACAAAAACAAUAGCCGCCACAAGGGGAACGAGGGUCGUGCA----------------- ..(((((((---((((.((....)).)).(((.(((..(((((---.((......................)).))))).))))))...))))..)))))----------------- ( -31.35) >consensus UUUUCGCCG_AGCAGCCGCUGCUACCGCCUUCGC___AGCGGCAUUAGCAUUAGGAGCAGCAAAUUUGGCGGCGGUACCAAGAGCAACGGCAGCGGCAAA_________________ ..............(((((((((((((((..(((....)))((....)).....................)))))).....(.....)))))))))).................... (-23.12 = -23.07 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:31 2006