Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,557,849 – 10,557,956 |
Length | 107 |
Max. P | 0.572913 |
Location | 10,557,849 – 10,557,956 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.36 |
Mean single sequence MFE | -23.68 |
Consensus MFE | -13.24 |
Energy contribution | -13.72 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.18 |
Mean z-score | -1.87 |
Structure conservation index | 0.56 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572913 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10557849 107 + 27905053 AGCUGUCACUUGGCAUUUUAUUGCCAUCAGAUAGCUGUAC------UCACAACAAAAUUCUACGACAACCCAACCGACAAAGCCCACACGAUGAUA-------GUUAAUUAAAAAGUUGU (((((((...(((((......)))))...)))))))....------..(((((.........((..........))...............((((.-------....))))....))))) ( -19.60) >DroSec_CAF1 6788 105 + 1 AGCUGUCACUUGGCAUUUUAUUGCCAUCAGAUAGCUGUAC------UCACAACAAAAGUCUACGACAACCCAUU--UCAGAGUCCACAUGAUGAUG-------UUUAAUUAAAAAGUUGU (((((((...(((((......)))))...)))))))....------..(((((....(((...)))....((((--(((.........))).))))-------............))))) ( -23.90) >DroSim_CAF1 6937 105 + 1 AGCUGUCACUUGGCAUUUUAUUGCCAUCAGAUAGCUGUAC------UCACAACAAAAGUCUACGACAACCCAUU--UCAAAGUCCACAUGAUGAUG-------UUUAAUUAAAUAGUUGU (((((((...(((((......)))))...)))))))....------..(((((....(((...)))....((((--(((.........))).))))-------............))))) ( -23.10) >DroEre_CAF1 15975 118 + 1 AGCUGUCACUUGGCAUUUUAUUGCCAUAAGAGUGCUGUACGAGAGUUCAGAACAGAAGUCUGUGGCAACCCACU--UCAAAGUCCACAUGAUGAUGGACUUGCUUUAAUUAAAAAGCUAU ...((((((.(((((......))))).....((.(((.((....)).))).))........)))))).......--...((((((((.....).)))))))(((((......)))))... ( -32.90) >DroYak_CAF1 16131 91 + 1 AGCUGUCACUUGGCACUUUAUUGCCAUAAG--------------------AACAAAAGUUGGUGGCAACCCAUU--UCAAAGUCCACAUGAUGAUG-------UUUAAUUAAAAAGCUGU ((((((((..(((.(((((.(((((((...--------------------(((....))).)))))))......--..))))))))..))))(((.-------....)))....)))).. ( -18.90) >consensus AGCUGUCACUUGGCAUUUUAUUGCCAUCAGAUAGCUGUAC______UCACAACAAAAGUCUACGACAACCCAUU__UCAAAGUCCACAUGAUGAUG_______UUUAAUUAAAAAGUUGU (((((((...(((((......)))))...))))))).........................(((((...............(....)....((((............))))....))))) (-13.24 = -13.72 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:29 2006