Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,550,131 – 10,550,239 |
Length | 108 |
Max. P | 0.695684 |
Location | 10,550,131 – 10,550,239 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 88.58 |
Mean single sequence MFE | -30.20 |
Consensus MFE | -23.59 |
Energy contribution | -24.27 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.16 |
Mean z-score | -2.26 |
Structure conservation index | 0.78 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695684 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10550131 108 + 27905053 AUUUAUUGUUAUUUGGCUUGUGUAGUCCCCAAGCAUAGGUGUAAUUGUUGAGGGAAGAAAAUAGGAGUUGUACGUUCAAAGAUCGGCUUGGUAACAGGAACUAGUUCG .....(((((((..(((((((....((((..((((..........))))..)))).....))).((.(((......)))...))))))..)))))))(((....))). ( -22.00) >DroSec_CAF1 24987 108 + 1 AGUUCUUGUUAUUUGGCAUAUAUAGUCCCCAAGCUGAAGUGUGAUUGUUGAAGGAAUAAUAUAGGAGUUGUUCGUUCGAUGAUCGGCUUGGUAACAGGAGCUAGUUCG ((((((((((((..(((.....((((......)))).....((((..(((((.(((((((......))))))).)))))..)))))))..))))))))))))...... ( -39.10) >DroSim_CAF1 25327 107 + 1 AGUUUUUGUUAUUUGGCAUGUAUAGUCC-CAAACUGAAGUGUAAUUGUUGAAGGAAGAAUAUAGGAGUUGUUCGUUCGAUGAUCGGCUUGGUAACAGGAACUAGUUCG ((((((((((((..(((.....((((..-...)))).......((..(((((.(((.(((......))).))).)))))..))..)))..))))))))))))...... ( -29.50) >consensus AGUUAUUGUUAUUUGGCAUGUAUAGUCCCCAAGCUGAAGUGUAAUUGUUGAAGGAAGAAUAUAGGAGUUGUUCGUUCGAUGAUCGGCUUGGUAACAGGAACUAGUUCG ((((((((((((..(((...............((......)).(((((((((.(((.(((......))).))).)))))))))..)))..))))))))))))...... (-23.59 = -24.27 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:25 2006