Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,463,519 – 1,463,639 |
Length | 120 |
Max. P | 0.745015 |
Location | 1,463,519 – 1,463,639 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.17 |
Mean single sequence MFE | -51.14 |
Consensus MFE | -44.88 |
Energy contribution | -45.68 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.06 |
Mean z-score | -1.32 |
Structure conservation index | 0.88 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745015 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1463519 120 - 27905053 UGCAGGCCUCACCACUCCCCGCCAGCAUCAAGUCGGCAUCUCCGCUGCGAAUGAAGCGCAUGGCAUCGCCCAGGGCAUGGGCACCUGUGGCGCAGGCCGUGGACACCGAGUGGUUAGGUC ....(((((.(((((((...(((.((.....)).)))...(((((((((.......)))).(((..((((((((((....)).)))).))))...))))))))....))))))).))))) ( -56.80) >DroSec_CAF1 36030 120 - 1 UGCAGGCCUCACCACUACCCGCCAGCAUCACAUCGGCAUCUCCGCUGCGGAUGAAACGCAUGGCAUCGCCCAGGGCAUGGGCACCUGUGGCGCAGGCCGUGGACACCGAGUGGUUCGGUC ....((((..((((((....(((...........)))...(((((((((.......)))).(((..((((((((((....)).)))).))))...)))))))).....))))))..)))) ( -50.10) >DroSim_CAF1 34314 120 - 1 UGCAGGCCUCACCACUCCCCGCCAGCAUCACGUCGGCAUCUCCGCUGCGGAUGAAGCGCAUGGCAUCGCCCAGGGCAUGGGCACCUGUGGCGCAGGCCGUGGACACCGAGUGGUUCGGUC ....((((..(((((((..(((...((((.((.((((......))))))))))..)))((((((..((((((((((....)).)))).))))...))))))......)))))))..)))) ( -58.30) >DroEre_CAF1 37926 120 - 1 UGCAGGCCUCACCACUCCCCGCCAACAUCACAUCGGCAUCUCCGCUGCGGAUAAACCGCAUGGCAUCCCCCAGGGCAUGGGCACCUGUGGCGCAGGCUGUGGACACCGAGUGGUUCGGUC ....((((..(((((((...(((...........)))...((((((((((.....))))).(((...(((((((((....)).)))).)).)...))))))))....)))))))..)))) ( -46.50) >DroYak_CAF1 36302 120 - 1 UGCAGGCCUCGCCACUCCCCGCCAGCAUCACAUCCGCAUCUCCGCUGCGAAUAAACCGCAUGGCAUCCCCCAGGGCAUGGGCACCAGUGGCGCAGGCUGUGGACACCGAAUGGUUCGGUC .((((.((((((((((.(((((((((........((((.......))))........)).))))..(((...)))...)))....))))))).)))))))....(((((.....))))). ( -43.99) >consensus UGCAGGCCUCACCACUCCCCGCCAGCAUCACAUCGGCAUCUCCGCUGCGGAUGAACCGCAUGGCAUCGCCCAGGGCAUGGGCACCUGUGGCGCAGGCCGUGGACACCGAGUGGUUCGGUC ....((((..(((((((...(((...........)))...(((((((((.......)))).(((..((((((((((....)).)))).))))...))))))))....)))))))..)))) (-44.88 = -45.68 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:02 2006