Locus 3871

Sequence ID	3R_DroMel_CAF1
Location	10,531,436 – 10,531,529
Length	93
Max. P	0.529134

overview

Window 1

Location	10,531,436 – 10,531,529
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	79.80
Mean single sequence MFE	-19.38
Consensus MFE	-12.96
Energy contribution	-13.60
Covariance contribution	0.64
Combinations/Pair	1.06
Mean z-score	-1.54
Structure conservation index	0.67
SVM decision value	-0.01
SVM RNA-class probability	0.529134
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10531436 93 - 27905053
CAAAUUUCAAUUGAAGUAAUGCAAGCUGGCUAACUGUGCCGUUUACCUAACUUGGCUUGCAAGCUGCAUGAAAAACAAAAGAUUGGCUAAAAA
....(((((..((.(((..(((((((((((.......)))(((.....)))..)))))))).))).))))))).................... ( -21.00)
>DroSec_CAF1 6722 74 - 1
CAAAUUUCAAUUGAAGUAAUGCAAGCUGGCUAACUGUGCCGUUUACCUAACUUGGCUUGCAAGCU-------------------GGCUAAAAA
...(((((....)))))..(((((((((((.......)))(((.....)))..))))))))....-------------------......... ( -18.80)
>DroSim_CAF1 5264 74 - 1
CAAAUUUCGAUUGAAGUAAAGCAAGCUGGCUAACUGUGCCGUUUACCUAACUUGGCUUGCAAGCU-------------------GGCUAAAAA
...(((((....)))))...((((((((((.......)))(((.....)))..))))))).....-------------------......... ( -17.30)
>DroEre_CAF1 6397 93 - 1
CAAAUUUCGAUGGAAGUAAAGCAAGCUGGCUAACUGUGCCGUUUACCUAACUUGGCUUACAGACGGCAGGCAAAACAAGAGGUUCGCUAAAAA
...(((((....)))))..(((..(((.(((..((((((((...........))))..))))..))).)))..(((.....))).)))..... ( -19.40)
>DroYak_CAF1 5505 93 - 1
CAAAUUUCAAUAGAAGUAAUGCAAGCUGGCUAACUGUGCCGUUUACCCAACUUGAUCUACAAACGGCAAGAAAAACAAAAGGUUGGCUAAAAA
...(((((....))))).........(((((((((.((((((((................))))))))............))))))))).... ( -20.41)
>consensus
CAAAUUUCAAUUGAAGUAAUGCAAGCUGGCUAACUGUGCCGUUUACCUAACUUGGCUUGCAAGCUGCA_G_AAAACAA_AG_UUGGCUAAAAA
...(((((....)))))...((((((((((.......)))(((.....)))..)))))))................................. (-12.96 = -13.60 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:08 2006