Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,529,628 – 10,529,743 |
Length | 115 |
Max. P | 0.998765 |
Location | 10,529,628 – 10,529,743 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 91.13 |
Mean single sequence MFE | -30.98 |
Consensus MFE | -29.60 |
Energy contribution | -29.20 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.06 |
Mean z-score | -2.00 |
Structure conservation index | 0.96 |
SVM decision value | 3.22 |
SVM RNA-class probability | 0.998765 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10529628 115 + 27905053 CAGAAUAUACACAGAUACAGAUAAAUAAAUCUGCGCCAUAUGCGAUAGAUAGCCAGGGGCAGUGCGUUUCAGAGUUGUAAAUCGCUUUAUGGCAUGCAGUUCAACGAACGAUAUA ..((((...........(((((......))))).((((((.(((((..((((((.(..((.....))..).).)))))..)))))..)))))).....))))............. ( -30.80) >DroSec_CAF1 4917 115 + 1 CAGAAUAUACACAGAUACAGAUAAAUAAAUCUGCGCCAUAUGCGAUAGAUAGCCAGGGGCAGUGCGUUUCAGCGUUGUAAAUCGCUUUAUGGCAUGCAGUUCAACGAACGAUAUA ..((((...........(((((......))))).((((((.(((((..((((((.(..((.....))..).).)))))..)))))..)))))).....))))............. ( -30.80) >DroSim_CAF1 3467 115 + 1 CAGAAUAUACACAGAUACAGAUAAAUAAAUCUGCGCCAUAUGUGAUAGAUAGCCGGGGGCAGUGCGUUUCAGCGUUGUAAAUCGCUUUAUGGCAUGCAGUUCAACGAACGAUAUA ..((((...........(((((......))))).((((((.(((((..((((((.(..((.....))..).).)))))..)))))..)))))).....))))............. ( -29.60) >DroEre_CAF1 4626 102 + 1 ---------UUCAGAUACAGAUA----AAUCUGCGCCAUAUGCGAUAGAUAGCCAGAGGCAGUGCGUUUCGGUGUUGUAAAUCGCUCUAUGGCAUGCAGUUCAACGAACGAUACA ---------..(((((.......----.))))).((((((.(((((..((((((.(((((.....))))).).)))))..)))))..)))))).....((((...))))...... ( -29.60) >DroYak_CAF1 3639 115 + 1 CCGAAUAAACGCAGAUACAGAUAAAUAAAUCUGCGCCAUAUGCGAUAGAUAGCCAGAGGCAGUGCGUUUCAGCGUUGUAAAUCGCUUUAUGGCAUGCAGUUCAACGAACGAUAUA ..((((....((((((............))))))((((((.(((((..((((((.(((((.....))))).).)))))..)))))..)))))).....))))............. ( -34.10) >consensus CAGAAUAUACACAGAUACAGAUAAAUAAAUCUGCGCCAUAUGCGAUAGAUAGCCAGGGGCAGUGCGUUUCAGCGUUGUAAAUCGCUUUAUGGCAUGCAGUUCAACGAACGAUAUA .................(((((......))))).((((((.(((((..((((((.(((((.....))))).).)))))..)))))..)))))).....((((...))))...... (-29.60 = -29.20 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:06 2006