Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,463,279 – 1,463,479 |
Length | 200 |
Max. P | 0.920242 |
Location | 1,463,279 – 1,463,399 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.92 |
Mean single sequence MFE | -36.99 |
Consensus MFE | -30.85 |
Energy contribution | -31.85 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.75 |
Structure conservation index | 0.83 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.920242 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1463279 120 - 27905053 CUGCAAGGUCGAACAUGCCCAUGCCCACGCACACUCCGAACCGCUCAAGCUCCUCCUCGCUCAAUUGCUUGGGGCACAGCUUUCCGGUUGACAAGGCCUCCUCAGCCGCCAAUACGGCAA ......(((.((....(((..(((....))).......(((((...(((((.((((..((......))..))))...)))))..))))).....)))....)).)))(((.....))).. ( -32.70) >DroSec_CAF1 35790 120 - 1 CUGCCAGGUCGAACAUGCCCAUGCCCACGCACACUCCGAUCCGCUCAAGCUCCUCCUCGCUCAAUUGCUUGGGGCACAACUUUCCGGUGGCCAAGGCCUCCUCAGCCGCCAAUACGGCAA .((((.((.......(((((.(((....)))..............(((((................)))))))))).......))((((((..(((...)))..)))))).....)))). ( -38.23) >DroSim_CAF1 34074 120 - 1 CUGCCAGGUCGAACAUGCCCAUGCCCACGCACACUCCGAACCGCUCAAGCUCCUCCUCGCUCAAUUGCUUGGGGCACAACUUUCCGGUGGCCAAGGCCUCCUCAGCCGCCAAUACGGCAA .((((.((.......(((((.(((....)))..............(((((................)))))))))).......))((((((..(((...)))..)))))).....)))). ( -38.23) >DroEre_CAF1 37686 120 - 1 CUGCCAGGUCGAACAUACCCAUGCCCACGCAUACUCCAAACCGCUCAAGCUGCUCCUCGCUCAAUUGCUUGGGGCAGAGCUUUCCGGUGGCCAAGGCCUCCUCCGCCGCCAAUACGGCCA ......(((((.........((((....))))..........((((....((((((..((......))..)))))))))).....((((((..(((...)))..))))))....))))). ( -41.60) >DroYak_CAF1 36062 120 - 1 CUGCCAGGUCGAACAUUCCCAUGCCAACGCAUACUCCAAACCGUUCAAGCUCUUCCUCGCUCAAUUGCUUGGGGCACAGCUUUCCGGUGGCCAAGGCCUCCUCCGCCGCCAAUACGGCCA ......(((((.........((((....))))..............(((((...((((((......))..))))...)))))...((((((..(((...)))..))))))....))))). ( -34.20) >consensus CUGCCAGGUCGAACAUGCCCAUGCCCACGCACACUCCGAACCGCUCAAGCUCCUCCUCGCUCAAUUGCUUGGGGCACAGCUUUCCGGUGGCCAAGGCCUCCUCAGCCGCCAAUACGGCAA ..(((.((.......(((((.(((....)))..............(((((................)))))))))).......))((((((..(((...)))..)))))).....))).. (-30.85 = -31.85 + 1.00)
Location | 1,463,359 – 1,463,479 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.58 |
Mean single sequence MFE | -43.36 |
Consensus MFE | -35.84 |
Energy contribution | -36.28 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.09 |
Mean z-score | -1.54 |
Structure conservation index | 0.83 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795030 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1463359 120 - 27905053 ACUGGGCAGCAGCCUGGGCACGAAAAAGGGGCUUACUCUGUUGUAACCUCGUUGCAGCUGGUUCCAGGCGCCAUAGACCUCUGCAAGGUCGAACAUGCCCAUGCCCACGCACACUCCGAA ..((((((((.(((((((.((.....((((.....))))((((((((...))))))))..)))))))))))....(((((.....))))).....))))))(((....)))......... ( -43.80) >DroSec_CAF1 35870 120 - 1 GCUGGGCAGCAGCCUGGGCACGAAAAAGGGGCUUACUCUGUUGUAGCCCCGUUGCAGCUGGUUCCAGGCGCCAUAGACCUCUGCCAGGUCGAACAUGCCCAUGCCCACGCACACUCCGAU ((((((((((((((((((.((......((((((.((......))))))))((....))..)))))))))......(((((.....))))).....)))...)))))).)).......... ( -48.80) >DroSim_CAF1 34154 120 - 1 GCUUGGCAGCAGCCGGGGCACGAAAAAGGGGCUUACUCUGUUGUAGCCUCGUUGCAGCUGGUUCCAGGCGCCAUAGACCUCUGCCAGGUCGAACAUGCCCAUGCCCACGCACACUCCGAA ((..(((.(((((.(((((((((...((((.....)))).)))).)))))))))).)))(((....((((.....(((((.....))))).....))))...)))...)).......... ( -42.50) >DroEre_CAF1 37766 120 - 1 GCUGGGCAACAGCCUGGGCACGAAAAAGGGGCUUACUCUGUUGUAGCCCCGUUGUAGCUGAUUCCAGGCUCCAUAAACCUCUGCCAGGUCGAACAUACCCAUGCCCACGCAUACUCCAAA ((((((((..(((((((((((((....((((((.((......)))))))).)))).)).....)))))))......((((.....))))............)))))).)).......... ( -44.30) >DroYak_CAF1 36142 120 - 1 GUUGGGCAACAGCCUGGGCACGAAAAAGGGGCUGACUCUGUUGUAGCCACGUUGUAGCUGGUUCCAGGCUCCAUAGACCUCUGCCAGGUCGAACAUUCCCAUGCCAACGCAUACUCCAAA (((((.((..(((((((..((((...((((.....)))).))))(((((.((....)))))))))))))).....(((((.....)))))...........)))))))............ ( -37.40) >consensus GCUGGGCAGCAGCCUGGGCACGAAAAAGGGGCUUACUCUGUUGUAGCCCCGUUGCAGCUGGUUCCAGGCGCCAUAGACCUCUGCCAGGUCGAACAUGCCCAUGCCCACGCACACUCCGAA ((((((((...(((((((..((....((((.....))))((((((((...))))))))))..)))))))......(((((.....)))))...........)))))).)).......... (-35.84 = -36.28 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:01 2006