Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,524,821 – 10,524,941 |
Length | 120 |
Max. P | 0.873292 |
Location | 10,524,821 – 10,524,941 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -46.37 |
Consensus MFE | -41.65 |
Energy contribution | -41.43 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.11 |
Mean z-score | -2.02 |
Structure conservation index | 0.90 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.735815 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10524821 120 + 27905053 UGGUAUCUUAGGCACUGCCCCGCUGGUGGCUCUAUGAGGGUGCUCACUGAGAUUCUUAUUGCGGUUGCUGCUAGCCACCAGCGCCGUGUUGAUGGCAAUUGCCGUCUCAGCUGAAUUGUA .(((......(((...)))..((((((((((..((((((((.(((...))))))))))).((((...)))).)))))))))))))((...((((((....))))))...))......... ( -46.30) >DroSim_CAF1 71660 120 + 1 UGGUAUCUUAGGCACUGCCCCGCUGGUGGCUCUAUGAAGGUGCUCACUGAGAUUCUUAUUGCGGUUGCUGCUAGCCACCAGCGCCGUGUUGAUGGCAAUUGCCGUCUCAGGUGAAUUGUA ...(((((..(((((.((...((((((((((.....((((..(((...)))..))))...((((...)))).)))))))))))).)))))((((((....))))))..)))))....... ( -42.70) >DroYak_CAF1 72126 120 + 1 UGGCAACUUAGGCACUGCCCCGCUGGUGGCUCUGUGGGGAUGCUCACUGAGAUUCUUGUUUCGGUUGCUGCUAGCCACCAGCGCCGUGUUGAUGGCAAUUGCCGUCUCAGCUGAAUUGUA ..((((.((((((((.((...((((((((((..(..(.(......((((((((....))))))))).)..).)))))))))))).)))).((((((....))))))....)))).)))). ( -50.10) >consensus UGGUAUCUUAGGCACUGCCCCGCUGGUGGCUCUAUGAGGGUGCUCACUGAGAUUCUUAUUGCGGUUGCUGCUAGCCACCAGCGCCGUGUUGAUGGCAAUUGCCGUCUCAGCUGAAUUGUA .(((......(((...)))..((((((((((...(((((((.(((...))))))))))..((((...)))).))))))))))))).((..((((((....)))))).))........... (-41.65 = -41.43 + -0.21)
Location | 10,524,821 – 10,524,941 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -39.83 |
Consensus MFE | -37.21 |
Energy contribution | -37.43 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.07 |
Mean z-score | -2.12 |
Structure conservation index | 0.93 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873292 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10524821 120 - 27905053 UACAAUUCAGCUGAGACGGCAAUUGCCAUCAACACGGCGCUGGUGGCUAGCAGCAACCGCAAUAAGAAUCUCAGUGAGCACCCUCAUAGAGCCACCAGCGGGGCAGUGCCUAAGAUACCA .................((((.(((((.((.....))(((((((((((....((....)).............(((((....)))))..))))))))))).))))))))).......... ( -40.80) >DroSim_CAF1 71660 120 - 1 UACAAUUCACCUGAGACGGCAAUUGCCAUCAACACGGCGCUGGUGGCUAGCAGCAACCGCAAUAAGAAUCUCAGUGAGCACCUUCAUAGAGCCACCAGCGGGGCAGUGCCUAAGAUACCA .................((((.(((((.((.....))(((((((((((....((....)).............(((((....)))))..))))))))))).))))))))).......... ( -38.80) >DroYak_CAF1 72126 120 - 1 UACAAUUCAGCUGAGACGGCAAUUGCCAUCAACACGGCGCUGGUGGCUAGCAGCAACCGAAACAAGAAUCUCAGUGAGCAUCCCCACAGAGCCACCAGCGGGGCAGUGCCUAAGUUGCCA .................((((((((((........)))((((((((((..........((........))...(((........)))..)))))))))).((((...)))).))))))). ( -39.90) >consensus UACAAUUCAGCUGAGACGGCAAUUGCCAUCAACACGGCGCUGGUGGCUAGCAGCAACCGCAAUAAGAAUCUCAGUGAGCACCCUCAUAGAGCCACCAGCGGGGCAGUGCCUAAGAUACCA .................((((.(((((.((.....))(((((((((((....((....)).............(((((....)))))..))))))))))).))))))))).......... (-37.21 = -37.43 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:02 2006