Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,514,736 – 10,514,842 |
Length | 106 |
Max. P | 0.580352 |
Location | 10,514,736 – 10,514,842 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 91.24 |
Mean single sequence MFE | -20.42 |
Consensus MFE | -14.80 |
Energy contribution | -15.04 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.06 |
Mean z-score | -1.90 |
Structure conservation index | 0.72 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580352 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10514736 106 - 27905053 AUCCUUCCCACUCGGCAGCCAAACAAUCGCAAUUGUACAUGACUCAUUUGAGUUAACACGUGCACAAUGAGCACC---------UUGAGCACGCCACCCCAUUGUGGCUAACCCC .............((..((((((((((....)))))...((((((....))))))....((((.......)))).---------))).))..(((((......)))))...)).. ( -23.40) >DroSec_CAF1 163220 106 - 1 AUCCUUCCCACACUGCGCCAAAACAAUCGCAAUUGUACAUGACUCAUUUGAGUUACCACUUCCACAAUGAGCACC---------UUGAGCACGCCACCCUAUUGUGGCUAACCCC .............(((..(((.(((((....)))))...((.((((((.((((....))))....))))))))..---------))).))).(((((......)))))....... ( -19.10) >DroSim_CAF1 61077 115 - 1 AUCCUUCCCACACUACGCCAAAACAAUCGCAAUUGUACAUGACUCAUUUGAGUUACCACUUGCACAAUGAGCACCUUGAGCACCUUGAGCACGCCACCCUAUUGUGGCUAACCCC ................(((((.......((((.((....((((((....)))))).)).)))).......((.......))...))).))..(((((......)))))....... ( -22.50) >DroEre_CAF1 61583 106 - 1 AUCCUUCCCACACUGCGCCAAAACAAUCGCAAUUGUAGAUGACUCAUUUGAGUUACCACUUACACAAUGAGCACC---------UUGAGCACGCUACCCUAUUGUGGCUAACCCC .............(((..(((.(((((....)))))...((.(((((((((((....)))))...))))))))..---------))).))).(((((......)))))....... ( -18.30) >DroYak_CAF1 61704 106 - 1 AUCCUUCCCACACUGCGCCAAAACAAUCGCAAUUGCACAUGACUCAUUUGAGUUACCACUUACACAAUGAACACC---------UUGAGCACGCCACCCUAUUGUGGCUAACCCC .............(((..(((.......((....))...((((((....))))))....................---------))).))).(((((......)))))....... ( -18.80) >consensus AUCCUUCCCACACUGCGCCAAAACAAUCGCAAUUGUACAUGACUCAUUUGAGUUACCACUUACACAAUGAGCACC_________UUGAGCACGCCACCCUAUUGUGGCUAACCCC ..............((......(((((....)))))...((((((....)))))).................................))..(((((......)))))....... (-14.80 = -15.04 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:53 2006