Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,457,932 – 1,458,037 |
Length | 105 |
Max. P | 0.870156 |
Location | 1,457,932 – 1,458,037 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 65.73 |
Mean single sequence MFE | -25.92 |
Consensus MFE | -15.83 |
Energy contribution | -15.83 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.16 |
Mean z-score | -1.30 |
Structure conservation index | 0.61 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870156 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1457932 105 - 27905053 GCUGGCAAGUGAUAGCUUUUCCACAUCAGCUGUGGCGGAAAAGCUUAUCGAAAAGCUCUCUCUCUAGCGGUUGGAAUUUUCAAAAUGUGU---CGGUGGAAAAUAGUU (((((((...((((((((((((.(((.....)))..)))))))).))))(((((..(((..((.....))..))).)))))......)))---))))........... ( -29.50) >DroSec_CAF1 30354 84 - 1 GCUGGCGAGUGAUAGCUUUUCCAUAUCAGCUGUGCCGGAAAAGCUUAUCGAAAAGCUCUAUUACUAUUUCUUUUAGAUUUC------------------------UUU (((..(((.....(((((((((..............)))))))))..)))...)))((((.............))))....------------------------... ( -18.36) >DroEre_CAF1 32179 103 - 1 GGUGGCGAAUGGCAGC-UUUCCACAUCAGCUGUGCCGGAAAAGCUUUUCAAAAAGCUCUGU----AACAGUUAGGAUUUUCAAAAGGUGCCGCCGGUGAAAUAUCAUU ((((((.....(((((-(.........))))))(((.((((((((((....)))))((((.----......)))).)))))....)))))))))(((((....))))) ( -29.90) >consensus GCUGGCGAGUGAUAGCUUUUCCACAUCAGCUGUGCCGGAAAAGCUUAUCGAAAAGCUCUAU__CUAACAGUUAGAAUUUUCAAAA_GUG____CGGUG_AA_AU_AUU ...(((...(((((((((((((.(((.....)))..)))))))).)))))....)))................................................... (-15.83 = -15.83 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:59 2006