| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,508,429 – 10,508,529 |
| Length | 100 |
| Max. P | 0.834184 |
| Location | 10,508,429 – 10,508,529 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 77.52 |
| Mean single sequence MFE | -19.07 |
| Consensus MFE | -10.10 |
| Energy contribution | -11.47 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.834184 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10508429 100 + 27905053 CA------GAUAAAGUCAACGAACUUAGGAAACUUUA-CCACACGGCUAAACUUUUCCACAUAAAAAGUC---UUCCCACUAAAAGUUCGAUGGCCAAUAAAAAUUACU-G----- ..------......((((.(((((((.(((((.((((-((....)).))))..)))))........(((.---.....)))..))))))).))))..............-.----- ( -18.70) >DroSec_CAF1 157155 102 + 1 CA------CAUAAAGUCAACGAACUUAGGAAACUUUA-CCACACGGCUAAAGUUUUUCGCAUAAAAAGUC-AUUUCCCACUAAAAGUUCGAUGGCCAAGAAAAAUGAGU-G----- ..------......((((.(((((((.((((((((((-((....)).)))))))))).........(((.-.......)))..))))))).))))..............-.----- ( -20.60) >DroSim_CAF1 55012 102 + 1 CA------CAUAAAGUCAACGAACUUAGGAAACUUUA-CCACACGGCUAAAGUUUUCCGCAUAAAAAGUC-AUUUCCCACUAAAAGUUCGAUGGCCAACAAAAAUGACU-G----- ..------.....(((((.(((((((.((((((((((-((....)).)))))))))).........(((.-.......)))..))))))).((.....))....)))))-.----- ( -23.10) >DroEre_CAF1 55416 100 + 1 CA------GAUAAAGUCAACGAACUUGGGAAACUUUA-CCACAACGCUAAACUUUUCCACCUAAAAAGUC---UUCCCACUAAAAGUUCGAUGGCCAACAAAAUUGACU-G----- ..------.....(((((((((((((((((((((((.-..........................))))).---)))))).....)))))).((.....))...))))))-.----- ( -20.13) >DroYak_CAF1 55384 103 + 1 CA------GAUAAAGUCAACGAACUUG-UAAACUUUA-CCACAAGGCUGAACUUUUCCGCAUAAAAAGUC---UUCCGACUAAAAGUUCGAUGGCCAACAACAUUGACU-G-AAUU ((------(.((((((..(((....))-)..))))))-......((((((((((((..........((((---....))))))))))))...))))...........))-)-.... ( -19.90) >DroPer_CAF1 52206 114 + 1 CAUCCCAUGCCAAAGUCAAAGAACUCAUAAAACUCGAGCCACAAGGCCAAU-UGUCACACCCCCAAAGCCCUCCUCUCGCCAAGAAUUCGAUGC-CACAAAAACUGGGUCGCAAAA .......(((..........(((.((.........(.(((....))))...-...............((.........))...)).)))(((.(-((.......)))))))))... ( -12.00) >consensus CA______GAUAAAGUCAACGAACUUAGGAAACUUUA_CCACAAGGCUAAACUUUUCCACAUAAAAAGUC___UUCCCACUAAAAGUUCGAUGGCCAACAAAAAUGACU_G_____ ..............((((.(((((((.(((((.((((.((....)).)))).))))).........(((.........)))..))))))).))))..................... (-10.10 = -11.47 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:48 2006