Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,507,685 – 10,507,795 |
Length | 110 |
Max. P | 0.598715 |
Location | 10,507,685 – 10,507,795 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 91.45 |
Mean single sequence MFE | -24.14 |
Consensus MFE | -18.37 |
Energy contribution | -17.41 |
Covariance contribution | -0.96 |
Combinations/Pair | 1.24 |
Mean z-score | -1.63 |
Structure conservation index | 0.76 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598715 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10507685 110 + 27905053 UUGAGAACAUAUCCAUUGUCCUGGGGAUCAAUGCUUCUAAGGAUUCUCUUCUUUUGGUCCAUAAUGCUGGUCUCUCGGCUAGGUCCUUUCAUGUUUUCCAUGAUUUCAUU ..((((((((..(((......)))(((((.(((..((.(((((......))))).))..)))...(((((....)))))..)))))....))))))))............ ( -25.40) >DroSec_CAF1 156423 110 + 1 UUGAGAACUUAUCCAUUGUCCUGGGGAUCAAUGCUUCUAAGGAUUCUCUUCUUUUGGUCCAUAAUGCUGGUCUCUCGGCUCGGUCCUUUCAUGUUUUCCAUGAUUUCAUU .(((((......(((......)))(((((.(((..((.(((((......))))).))..)))...(((((....)))))..)))))..(((((.....)))))))))).. ( -23.90) >DroSim_CAF1 54270 110 + 1 UUGAGAACUUAUCCAUUGUCCUGGGGAUCAAUGCUUCUAAGGAUUCUGUUCUUUUGGUCCAUAAUGCUGGUCUCUCGGCUCGGUCCUUUCAUGUUUUCCAUGAUUUCAUU .(((((......(((......)))(((((.(((..((.(((((......))))).))..)))...(((((....)))))..)))))..(((((.....)))))))))).. ( -23.90) >DroEre_CAF1 54678 110 + 1 UUGAGAACUUAUCCAUUGUCCUGUGGAUCAAUAGUUCUAAGGAUUCUUUCUUUUUCAUUCAUAAUGCUGGCCUCUCGGUUCGGCCCUUUUAUGUUUUCCAUGAUUUCAUU ...((((((.((((((......))))))....))))))(((((.....))))).((((.(((((.(((((((....)).)))))....)))))......))))....... ( -22.80) >DroYak_CAF1 54653 110 + 1 UUGAGAACUUAACCAUUGUCCUGUGGAUCAAUGUUUCUAAGGAUUCUAUCCUUUUGACUCAUAAUGCUGGUCUCUCGGCUCGGCACUUUCAUGUUUUCCAUGGUUUCAUU .((((........((((((((...))).)))))..((.((((((...))))))..))))))...((((((((....))).)))))...(((((.....)))))....... ( -24.70) >consensus UUGAGAACUUAUCCAUUGUCCUGGGGAUCAAUGCUUCUAAGGAUUCUCUUCUUUUGGUCCAUAAUGCUGGUCUCUCGGCUCGGUCCUUUCAUGUUUUCCAUGAUUUCAUU .(((((......((..........(((((((.......(((((.....)))))))))))).....(((((....)))))..)).....(((((.....)))))))))).. (-18.37 = -17.41 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:47 2006