Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,505,906 – 10,506,003 |
Length | 97 |
Max. P | 0.781275 |
Location | 10,505,906 – 10,506,003 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 75.43 |
Mean single sequence MFE | -16.26 |
Consensus MFE | -8.79 |
Energy contribution | -9.39 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.85 |
Structure conservation index | 0.54 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781275 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10505906 97 + 27905053 GAUCAGGUACAA---C-AAAUCGAGAUUCCUGCCUACUCACUUUUAUUUAUUUGGCAAAGGAUUUCGAUAUUUGCCGUAUCCUCAAAUCCCCUUCUCUAUC-- (((.((((((..---(-((((((((((((.((((...................))))..))))))))))..)))..))).)))...)))............-- ( -19.81) >DroSec_CAF1 154563 81 + 1 GAUCAGGUACAA---C-AAAUCGACAUUCCUGCCUACUCACUUUUAUUUAUUUGGCAAAGGAUUUCGAUA---------------AAUCU-CUCCUUUACC-- ....(((.....---.-..(((((...(((((((...................)))..))))..))))).---------------.....-..))).....-- ( -13.60) >DroSim_CAF1 52477 82 + 1 GAUCAGGUACAA---C-AAAUCGACAUUCCUGCCUACUCACUUUUAUUUAUUUGGCAAAGGAUUUCAAUA---------------AAUCCCCUCCUUUACC-- .....((((...---.-.............((((...................))))..((((((....)---------------))))).......))))-- ( -10.61) >DroEre_CAF1 52858 89 + 1 GAUCAGGUACAA---C-AAAUCGACAUUCCUGCCUACUCACUUU-GGUUAUUUGGCAAAGGAUUUCGAUAUUUGCCUUACGCUCAAAUCCCCU---------U ....(((((...---.-..(((((...(((((((.....((...-.)).....)))..))))..)))))...)))))................---------. ( -15.90) >DroYak_CAF1 52762 102 + 1 GAUCAGGCAUCCUGUCAGGAUCGACAUUCCUGCCUACUCACUUU-GGUUAUUUGGCAAAGGAUUCCAAUAUUUGCCAUACCCUCAAAUCCACUCCCUAGCCCA ((..(((((...((((......))))....)))))..)).....-(((....(((((((...........))))))).)))...................... ( -21.40) >consensus GAUCAGGUACAA___C_AAAUCGACAUUCCUGCCUACUCACUUUUAUUUAUUUGGCAAAGGAUUUCGAUAUUUGCC_UA__CUCAAAUCCCCUCCUUUACC__ ...................(((((...(((((((...................)))..))))..))))).................................. ( -8.79 = -9.39 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:46 2006