Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,505,632 – 10,505,729 |
Length | 97 |
Max. P | 0.751927 |
Location | 10,505,632 – 10,505,729 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 72.74 |
Mean single sequence MFE | -24.10 |
Consensus MFE | -18.58 |
Energy contribution | -18.50 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.20 |
Mean z-score | -0.75 |
Structure conservation index | 0.77 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751927 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10505632 97 - 27905053 ------------------AAAGAUGAGCGAAGGUUCAUUUCAAGUUAAUUUGUAUAGUAUUUUUGGCCAAGUGUAUAUAAGUCACUUGUCACUUUCCUUGUGGGCCUUUCCGUAG ------------------..((((((((....))))))))........................(((((((((.........)))))..(((.......)))))))......... ( -22.00) >DroSec_CAF1 154293 97 - 1 ------------------AAAGAUGAACGAAUGUUCAUUUCAAGUUAAUUUGUAUAGUCAUUUUGGCCAAGUGUAUGUUAGUCACUUGUCACUUUCCUUGUGGGCCUUUCCAUAG ------------------..((((((((....))))))))...(((((..((......))..)))))((((((.((....))))))))..........((((((....)))))). ( -19.40) >DroSim_CAF1 52220 84 - 1 ------------------AAGGAUGAACGAAGGUUCAUUUCAAGUUAAUU-------------UGGCCAAGUGUAUAUUAGUCACUUGUCACUUUCGUUGUGGGCCUUUCCGUAG ------------------..((((((((....))))).............-------------.(((((((((.........)))))..(((.......)))))))..))).... ( -22.80) >DroEre_CAF1 52590 113 - 1 UGUAAGAAGCAUUCCCGUGCGAGUGAGCGAAGGUUAACUUCAAGUUAAUUUGCACAGUU-UUUUGGCCAAGUGUAUACUGGCCACUUGUCACUUUC-UUGUGGGCCUUUCCGCAG ...((((((.......((((((((.(((((((.....))))..))).))))))))....-...((((((.((....))))))))........))))-))(((((....))))).. ( -32.50) >DroYak_CAF1 52471 114 - 1 UGCAAGAUGCAUUGCCAUGCAGAUAAACAAAUGCUCCUUUCAAGUUAAUUGGCACCGUC-UUUUGGCCAAGUGCAUAUUGUUCACUUGUCACUUUCGCUGUGGGCCUUUCCGUAG (((((((((...(((((.(((..........)))...............))))).))))-))..(((((((((.(......))))))..(((.......))))))).....))). ( -23.79) >consensus __________________AAAGAUGAACGAAGGUUCAUUUCAAGUUAAUUUGCACAGUC_UUUUGGCCAAGUGUAUAUUAGUCACUUGUCACUUUCCUUGUGGGCCUUUCCGUAG ....................((((((((....))))))))........................(((((((((.........)))))..(((.......)))))))......... (-18.58 = -18.50 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:45 2006