Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,505,338 – 10,505,432 |
Length | 94 |
Max. P | 0.616382 |
Location | 10,505,338 – 10,505,432 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 81.52 |
Mean single sequence MFE | -18.82 |
Consensus MFE | -12.14 |
Energy contribution | -13.42 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.06 |
Mean z-score | -1.76 |
Structure conservation index | 0.65 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616382 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10505338 94 + 27905053 CCUU--AUUCCCGAGGAGGCACUUCAAUGACAAGGACUUCAAUUCUUCUGUCCUUCCCUCCAUUUCUCCCGAGGACUUCUUGGUCGAACUGCAGCU ....--....((((((((.............((((((............)))))).((((..........)))).))))))))............. ( -20.80) >DroSec_CAF1 154014 80 + 1 ----------------AGGCACUUCAAUGACAAGGACUUUCAUUCUUCUGUCCUUCCCUCCAUUUCUCCCGAGGACUUCUUAGUUGAACUGCAGCU ----------------..(((.((((((...((((((............)))))).((((..........))))........)))))).))).... ( -18.80) >DroSim_CAF1 51941 80 + 1 ----------------AGGCACUUCAAUGACAAGGACUUCUAUUCUUCUGUCCUUCCCUCCAUUUCUCCCGAGGACUUCUUAGUUGAACUGCAGCU ----------------..(((.((((((...((((((............)))))).((((..........))))........)))))).))).... ( -18.80) >DroEre_CAF1 52306 88 + 1 CCCU--AUGC-----GAGGCAC-UCACUGACAAGGACUUCCAUUCUUCUGUCCUGCCCUCCAUUUCUCCCGAGGACUUCUCGGUUGAGCUGCAGCU ....--..((-----...((((-(((((((..(((((............)))))..((((..........)))).....)))).)))).))).)). ( -23.80) >DroYak_CAF1 52179 91 + 1 CCUUCGCUUC-----GACACACUUCAAUGACAAGGACUUCCAUUCUUCCAUCCUGCCCUCCAUUUCAUCCGUGGACUUCUAAGUUGCGCUGCAGCU .....((..(-----(.((.((((.........((....)).................(((((.......))))).....))))))))..)).... ( -11.90) >consensus CC_U___U_C_____GAGGCACUUCAAUGACAAGGACUUCCAUUCUUCUGUCCUUCCCUCCAUUUCUCCCGAGGACUUCUUAGUUGAACUGCAGCU ..................(((.((((((....(((((............)))))..((((..........))))........)))))).))).... (-12.14 = -13.42 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:44 2006