Locus 3853

Sequence ID 3R_DroMel_CAF1
Location 10,502,372 – 10,502,466
Length 94
Max. P 0.881269
window6173

overview

Window 3

Location 10,502,372 – 10,502,466
Length 94
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 81.36
Mean single sequence MFE -9.58
Consensus MFE -6.93
Energy contribution -7.05
Covariance contribution 0.12
Combinations/Pair 1.25
Mean z-score -1.98
Structure conservation index 0.72
SVM decision value 0.92
SVM RNA-class probability 0.881269
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10502372 94 - 27905053
UAAGCGAUUUACUCAUUAUAUAAAAUUUUACUGCUCUCAUCUGU----UUUAUUUAUAAUCAUUGCAUUUUUAUGCCAUUUAAAUCGUUUCUUCCUCC
.((((((((((...((((((((((((................))----))))..))))))....((((....))))....))))))))))........ ( -11.99)
>DroSec_CAF1 151087 84 - 1
UAAGGGAUUUACC----------AAUUUUACUGCUCCCAUCUGU----UUUAUUUAUAAUCAUUGCGUUUUUAUGCCAUUUAAAUCGCUUCUUCCUCU
.(((.((((((..----------.....((..((........))----..))............((((....))))....)))))).)))........ (  -7.80)
>DroSim_CAF1 49003 94 - 1
UAAGCGAUUUACUCAUUAUAUCAAAUUUUACUGCUCCCAUCUGU----UUUAUUUAUAAUCAUUGCAUUUUUAUGCCAUUUAAAUCGCUUCUUCCUCU
.((((((((((...((((((........................----......))))))....((((....))))....))))))))))........ ( -12.41)
>DroEre_CAF1 49333 94 - 1
UUAUCGAUAUAGUCAUUAUAA----UUUUACUGCUCUCAUCUGGCUUAUUUAUUUAUUUUCAUUGCAUUUUUAUGUCACCUAAAUCGUUGCUUCCUCC
....((((.(((.........----.......(((.......)))...................((((....))))...))).))))........... (  -6.10)
>consensus
UAAGCGAUUUACUCAUUAUAU__AAUUUUACUGCUCCCAUCUGU____UUUAUUUAUAAUCAUUGCAUUUUUAUGCCAUUUAAAUCGCUUCUUCCUCC
.((((((((((.....................((........))....................((((....))))....))))))))))........ ( -6.93 =  -7.05 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:41 2006