| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,501,914 – 10,502,018 |
| Length | 104 |
| Max. P | 0.584542 |
| Location | 10,501,914 – 10,502,018 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 80.47 |
| Mean single sequence MFE | -22.21 |
| Consensus MFE | -14.32 |
| Energy contribution | -14.60 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.584542 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10501914 104 + 27905053 UGGGCUGCAAACACUGCAGCCGAAUACAAAUUGAAAAUGCAUACAAACGAUAUUCCCUCUUUUCCCCCUCAAAGAAAUGA--AAAAGAAAUGCGUUUACUGCCUCU ..(((((((.....))))))).................(((...(((((.((((...((((((.....(((......)))--)))))))))))))))..))).... ( -21.10) >DroSec_CAF1 150655 101 + 1 UGGGCUGUGAA--CUGCAGUCGAAUACAAAUUCAAAAUGCAUACGAACGUUUUUCACUCUUUCCCCCCUCAAAAA-AUAA--AAAAGAAAUGCGUUUACUGCCCCG .((((.(((((--(.(((.((((((....))))((((((........))))))......................-....--....))..))))))))).)))).. ( -20.80) >DroSim_CAF1 48577 103 + 1 UGGGCUGUGAA--CUGCAGUCGAAUACAAAUUGAAAAUGCAUACGAACGUUUUUCACUCUUUCCCCCCUCAAAAA-ACAAAAAAAAGAAAGGCGUUUACUGCCCCG .((((.(((((--(((((.((((.......))))...)))).......(((((((....................-..........))))))))))))).)))).. ( -23.91) >DroEre_CAF1 48906 87 + 1 GGGGCUGUGAA--CUGCAGCCGAAUACAAAUUGGAAAUGCAUACGAACGUUUUUCACUCUUCCCCCCAA-----------------AAAAUGCGUUUGCUGCCUCG (((((.(..((--(((((.((((.......))))...))))......(((((((..............)-----------------)))))).)))..).))))). ( -23.14) >DroYak_CAF1 48690 95 + 1 UGGGCUGUGAA--CUGCAGCCGAAUACAAAUGGGAAAUGCAUACGUACGUUUUUCACUCUAUCCCCCAACGA-------A--AACAAAAAUGCGUUUACUGCCCCG .((((.(((((--(.(((............((..(((((........)))))..)).....((.......))-------.--........))))))))).)))).. ( -22.10) >consensus UGGGCUGUGAA__CUGCAGCCGAAUACAAAUUGAAAAUGCAUACGAACGUUUUUCACUCUUUCCCCCCUCAAA_A_A__A__AAAAGAAAUGCGUUUACUGCCCCG ..(((((((.....))))))).................(((...((((((.((((...............................)))).))))))..))).... (-14.32 = -14.60 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:40 2006