Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,501,140 – 10,501,310 |
Length | 170 |
Max. P | 0.932738 |
Location | 10,501,140 – 10,501,230 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 85.08 |
Mean single sequence MFE | -31.75 |
Consensus MFE | -25.12 |
Energy contribution | -26.62 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.09 |
Mean z-score | -1.73 |
Structure conservation index | 0.79 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757696 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10501140 90 + 27905053 CUGAGGGGGG-GAAGUGCUGAGAAAGCCCGCAGGCUUGAAACUGAUUUUGAAU------------------UUUAUAUCUCCUCUGCAUUUGUCACUUGUCAACGCUC-G- .(((.(((((-.((((((.(((.(((((....)))))......(((.......------------------.....)))..))).)))))).)).))).)))......-.- ( -23.00) >DroSec_CAF1 149868 108 + 1 CUGAGGGGGG-GAAGUGCAGAGAAAGCCCGCAGGCUUGAAACUGAUUUGGAAUUGGGCUCACAUAUUUAGUUUUAUAUCUUCGCUGCAUUUGUCACUUGUCAACCCCC-A- ....(((((.-.((((((((.(((((((....))))(((((((((..((((.......)).))...)))))))))....))).))))))))(.(....).)..)))))-.- ( -34.70) >DroSim_CAF1 47807 108 + 1 CUGAGGGGGG-GAAGUGCAGAGAAAGCCCGCAGGCUUGAAACUGAUUUUGAAUUGGGCUCACACAUUUAGUUUUAUAUCUUCGCUGCAUUUGUCACUUGUCAACCCCC-A- ....(((((.-.((((((((.(((((((....))))(((((((((...(((.......))).....)))))))))....))).))))))))(.(....).)..)))))-.- ( -33.50) >DroYak_CAF1 47802 111 + 1 CCGAGGGGGGAAAAAUGCAGAGAAAGCCCGCAGGCUUGAAACUGAUUUUGAAUUGGGCUCACACAUUUAAUUUUAUAUCUUCUCUGCAUUUGUCACUUGUCAACCCCCAAA ....(((((...((((((((((((((((....)))))((..(..((.....))..)..))....................)))))))))))(.(....).)..)))))... ( -35.80) >consensus CUGAGGGGGG_GAAGUGCAGAGAAAGCCCGCAGGCUUGAAACUGAUUUUGAAUUGGGCUCACACAUUUAGUUUUAUAUCUUCGCUGCAUUUGUCACUUGUCAACCCCC_A_ ....(((((...((((((((((((((((....)))))......(((...((((((((........))))))))...))).)))))))))))(.(....).)..)))))... (-25.12 = -26.62 + 1.50)
Location | 10,501,201 – 10,501,310 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.74 |
Mean single sequence MFE | -30.68 |
Consensus MFE | -15.65 |
Energy contribution | -15.61 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.16 |
Mean z-score | -2.33 |
Structure conservation index | 0.51 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932738 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10501201 109 + 27905053 CCUCUGCAU---------UUGUCACUUGUCAACGCUC-G-AGGGGGAGAAUAGCAGCCAAAGGAGGGGUUAAUAAAUAAAUAUGUGCCCGUCCUGUCGCCCUAACUCUCAAUCUUCUCUC ((((.((..---------(((.(....).))).))..-)-)))(((((..(((..((...((((.((((..(((......)))..)))).))))...)).))).)))))........... ( -29.80) >DroSec_CAF1 149947 101 + 1 UCGCUGCAU---------UUGUCACUUGUCAACCCCC-A-AGGGGGAAAAUAGCAGCCAAAGGAGGGGUUAAUAAAUAAAUAUGUGUCCG--------UCCUAACUCUCAAUCUCCUCUC ..(((((..---------(((.(....).)))((((.-.-..))))......)))))...((((.(((...(((......)))...))).--------)))).................. ( -27.40) >DroSim_CAF1 47886 90 + 1 UCGCUGCAU---------UUGUCACUUGUCAACCCCC-A-AGGGGGAAAAUAGCAGCCCAAGGAGGGGUUAAUAAAUAA-------------------CCCUAACUCUCAAUCUCCUCUC ..(((((..---------(((.(....).)))((((.-.-..))))......)))))...(((((((((((.....)))-------------------)))...........)))))... ( -28.80) >DroEre_CAF1 48193 116 + 1 UCUCUGCAUUCUCUGCUUUUGUCACUUGUCAACCCCCCA-AGUGGGAAAAUAGCAGCGUUAGGAGGGGUUAAUAAAUAAAUAUGUGCCCGUCCUGUCGCCCUAACUCCCAAUCUGCG--- .....(((.....(((((((.(((((((.........))-))))).)))..))))(((.(((((.((((..(((......)))..)))).))))).)))..............))).--- ( -33.90) >DroYak_CAF1 47882 111 + 1 UCUCUGCAU---------UUGUCACUUGUCAACCCCCAAAAGGGGGAAAAUAGCAGCGAUGGGCGGGGUUAAUAAAUAAAUAUGUGCCCGUCCUGUCGCCCUUACUCUCAAUCUCCUAAC ....(((..---------(((.(....).)))(((((....)))))......)))((((((((((((....(((......)))...))))))).)))))..................... ( -33.50) >consensus UCUCUGCAU_________UUGUCACUUGUCAACCCCC_A_AGGGGGAAAAUAGCAGCCAAAGGAGGGGUUAAUAAAUAAAUAUGUGCCCGUCCUGUCGCCCUAACUCUCAAUCUCCUCUC ...((((...........(((.(....).)))(((((....)))))......))))....((..((((..............................))))..)).............. (-15.65 = -15.61 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:39 2006