Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,457,181 – 1,457,301 |
Length | 120 |
Max. P | 0.755972 |
Location | 1,457,181 – 1,457,301 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.67 |
Mean single sequence MFE | -33.16 |
Consensus MFE | -26.73 |
Energy contribution | -27.29 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.15 |
Mean z-score | -1.63 |
Structure conservation index | 0.81 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755972 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1457181 120 + 27905053 GUCAGUUCUGCGAAUGUCCAAGUAUCUCAUGAGUGUGUUCGAGAAUAACGAAGCUAUCGAGAGUUCCGAGGAAGAGAAUGAAUCUCUGGAAAAUGUAGAGCUCGAGCAGAUCUAUCUGCA .(((((((((((....((((....((((...(((...((((.......)))))))...)))).(((....)))((((.....))))))))...))))))))).))(((((....))))). ( -33.90) >DroSec_CAF1 29625 120 + 1 GUCAGUUCUGCGAAUGUCCAAGUAUCUCAUAAGUGUAUUCCAGAAUGAUGAAGCUAUCGAGAGUUCCGAGGAAGAGAAUGAAUCUCUGGAAAGUGGAGAGCUCGAGCAGAUCUAUCUGCA ((((.(((((.(((((..(.............)..)))))))))))))).......(((((..(((((....(((((.....)))))......)))))..)))))(((((....))))). ( -36.72) >DroSim_CAF1 27899 120 + 1 GUCAGUUCUGCGAAUGUCCAAGUAUCUCAUAAGUCUAUUCCAGAAUGAUGAAGCUAUCGAGAGUUCCGAGGAAGAGAAUGAAUCUCUGGAAAGUGGAGAGCUCGAGCAGAUCUAUCUGCA ((((.(((((.(((((..(.............)..)))))))))))))).......(((((..(((((....(((((.....)))))......)))))..)))))(((((....))))). ( -35.62) >DroEre_CAF1 31307 120 + 1 GUCAGUUCUGCGAGUGUCAAGGUAUGUCAUAAGAGUAUUCCAGAAUGACAAUGCUAUUGAGAGUUCCGAGGAAGAGAAUGAAUCUCUAGAAAAUAGAGAGCUCGAGCAGAUCUAUCUGCA ((((.(((((.(((((((..............)).)))))))))))))).......(((((.(((((......).))))...((((((.....)))))).)))))(((((....))))). ( -31.74) >DroYak_CAF1 29723 120 + 1 GUCAGUUCUGCGAGUUUCAAGGUAUGUGAUAAGAUUAUUCCAGAAUGACGGAUUUAUCGAGAGUUUCGAGGAAGAGAAUGCAUCUCUGGAAAAAGAAGAACUGGAGCAAAUCUAUCUGCA .((((((((.(...(((((..(.((((.....(((...(((........)))...))).....((((......))))..)))))..)))))...).)))))))).(((........))). ( -27.80) >consensus GUCAGUUCUGCGAAUGUCCAAGUAUCUCAUAAGUGUAUUCCAGAAUGACGAAGCUAUCGAGAGUUCCGAGGAAGAGAAUGAAUCUCUGGAAAAUGGAGAGCUCGAGCAGAUCUAUCUGCA ((((.(((((.(((((...................)))))))))))))).......(((((..(((((....(((((.....)))))......)))))..)))))(((((....))))). (-26.73 = -27.29 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:58 2006